Added SqlRender functionality to the DDLGeneratr package and incorporated the pdf creation.

DDLGeneratr/DDLGeneratr.Rproj

@@ -18,3 +18,4 @@ StripTrailingWhitespace: Yes
 BuildType: Package
 PackageUseDevtools: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source
+PackageRoxygenize: rd,collate,namespace

DDLGeneratr/DESCRIPTION

@@ -8,7 +8,10 @@ Description: This packages uses the SqlRender package to convert a DDL script wr
 License: Apache License 2.0
 Encoding: UTF-8
 LazyData: true
-Imports: SqlRender
+VignetteBuilder: knitr
+Imports: 
+  SqlRender, 
+  rmarkdown
 NeedsCompilation: no
 RoxygenNote: 6.0.1
-VignetteBuilder: knitr
+

DDLGeneratr/NAMESPACE

@@ -1 +0,0 @@
-exportPattern("^[[:alpha:]]+")

DDLGeneratr/R/hello.R

@@ -1,18 +0,0 @@
-# Hello, world!
-#
-# This is an example function named 'hello' 
-# which prints 'Hello, world!'.
-#
-# You can learn more about package authoring with RStudio at:
-#
-#   http://r-pkgs.had.co.nz/
-#
-# Some useful keyboard shortcuts for package authoring:
-#
-#   Build and Reload Package:  'Ctrl + Shift + B'
-#   Check Package:             'Ctrl + Shift + E'
-#   Test Package:              'Ctrl + Shift + T'
-
-hello <- function() {
-  print("Hello, world!")
-}

DDLGeneratr/R/writeDDL.R

@@ -0,0 +1,39 @@
+# Copyright 2017 Observational Health Data Sciences and Informatics
+#
+# This file is part of DDLGeneratr
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+#' Write DDL script
+#'
+#' @param targetdialect  The dialect of the target database. Choices are "oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server"
+#'
+#' @export
+writeDDL <- function(targetdialect) {
+  if(!dir.exists("output")){
+    dir.create("output")
+  }
+
+  if(!dir.exists(paste0("output/",targetdialect))){
+    dir.create(paste0("output/",targetdialect))
+  }
+
+  sql <- SqlRender::loadRenderTranslateSql(sqlFilename = "OMOP CDM ddl.sql",
+                                           packageName = "DDLGeneratr",
+                                           dbms = targetdialect,
+                                           targetdialect = targetdialect)
+
+  SqlRender::writeSql(sql = sql,
+                      targetFile = paste0("output/",targetdialect,"/OMOP CDM ",targetdialect," ddl.txt"))
+
+}

DDLGeneratr/R/writePDF.R

@@ -0,0 +1,36 @@
+# Copyright 2017 Observational Health Data Sciences and Informatics
+#
+# This file is part of DDLGeneratr
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+#' Write PDF of CDM documentation
+#'
+#' @param mdFilesLocation  The dialect of the target database. Choices are "oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server"
+#'
+#' @param cdmVersion The version of the OMOP Common Data Model for which the pdf document is being written. It should be written without a decimal so v5.3 becomes v5_3
+#'
+#' @export
+writePDF <- function(mdFilesLocation, cdmVersion) {
+
+sql <- SqlRender::loadRenderTranslateSql(sqlFilename = "OMOP_CDM_PDF.sql",
+                                         packageName = "DDLGeneratr",
+                                         dbms = "sql server",
+                                         mdFilesLocation = mdFilesLocation)
+
+SqlRender::writeSql(sql = sql,
+                    targetFile = "reports/OMOP_CDM_PDF_rendered.Rmd")
+
+rmarkdown::render(input = "reports/OMOP_CDM_PDF_rendered.Rmd", output_format = "pdf_document", output_file = paste0("OMOP_CDM_",cdmVersion,".pdf"))
+
+}

DDLGeneratr/codeToRun.R

@@ -0,0 +1,21 @@
+#This script is meant to create the OMOP Common Data Model DDLs for each dialect as well as the pdf of the documentation.
+
+
+# Step 1: Update the file inst/sql/sql_server/OMOP CDM ddl.sql with the changes for the new version
+
+# Step 2: Run the following code to create the DDLs for each dialect:
+
+writeDDL("bigquery")
+writeDDL("impala")
+writeDDL("netezza")
+writeDDL("oracle")
+writeDDL("pdw")
+writeDDL("postgresql")
+writeDDL("redshift")
+writeDDL("sql server")
+
+# Step 3: Update the .md wiki files with the changes for the new version
+
+# step 4: Run the following code to create the pdf documentation. It will be written to the reports folder.
+
+writePDF(mdFilesLocation = "../../Documentation/CommonDataModel_Wiki_Files", cdmVersion = "v5_3")

DDLGeneratr/inst/sql/sql_server/OMOP CDM ddl.sql

@@ -26,7 +26,7 @@
  ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
 
 
-script to create OMOP common data model version 5.3
+@targetdialect script to create OMOP common data model version 5.3
 
 last revised: 6-Nov-2017
 
@@ -292,7 +292,6 @@ CREATE TABLE death
 ;
 
 
-
 CREATE TABLE visit_occurrence
 (
   visit_occurrence_id			      INTEGER			NOT NULL ,
@@ -316,7 +315,6 @@ CREATE TABLE visit_occurrence
 ;
 
 
-
 CREATE TABLE visit_detail
 (
   visit_detail_id             INTEGER     NOT NULL ,
@@ -342,14 +340,13 @@ CREATE TABLE visit_detail
 ;
 
 
-
 CREATE TABLE procedure_occurrence
 (
   procedure_occurrence_id		  INTEGER			NOT NULL ,
   person_id						        INTEGER			NOT NULL ,
   procedure_concept_id			  INTEGER			NOT NULL ,
   procedure_date				      DATE			  NOT NULL ,
-  procedure_datetime			    DATETIME2		NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
   procedure_type_concept_id		INTEGER			NOT NULL ,
   modifier_concept_id			    INTEGER			NULL ,
   quantity						        INTEGER			NULL ,
@@ -363,7 +360,6 @@ CREATE TABLE procedure_occurrence
 ;
 
 
-
 CREATE TABLE drug_exposure
 (
   drug_exposure_id				      INTEGER			  NOT NULL ,
@@ -436,7 +432,6 @@ CREATE TABLE condition_occurrence
 ;
 
 
-
 CREATE TABLE measurement
 (
   measurement_id				        INTEGER			NOT NULL ,

DDLGeneratr/inst/sql/sql_server/OMOP_CDM_PDF.sql

@@ -0,0 +1,207 @@
+---
+title: "OMOP Common Data Model Specifications"
+author: "Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan and Clair Blacketer"
+date: "`r Sys.Date()`"
+output:
+  pdf_document:
+    number_sections: yes
+    toc: yes
+linkcolor: blue
+---
+
+# License
+
+```{r child = '@mdFilesLocation/License.md'}
+```
+
+# Background
+```{r child = '@mdFilesLocation/Background/Background.md'}
+```
+
+## The Role of the Common Data Model
+```{r child = '@mdFilesLocation/Background/The-Role-of-the-Common-Data-Model.md'}
+```
+
+## Design Principles
+```{r child = '@mdFilesLocation/Background/Design-Principles.md'}
+```
+
+## Data Model Conventions
+```{r child = '@mdFilesLocation/Background/Data-Model-Conventions.md'}
+```
+
+# Glossary of Terms
+```{r child = '@mdFilesLocation/Glossary-of-Terms.md'}
+```
+
+# Standardized Vocabularies
+```{r child = '@mdFilesLocation/StandardizedVocabularies/Standardized-Vocabularies.md'}
+```
+
+## CONCEPT
+```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT.md'}
+```
+
+## VOCABULARY
+```{r child = '@mdFilesLocation/StandardizedVocabularies/VOCABULARY.md'}
+```
+
+## DOMAIN
+```{r child = '@mdFilesLocation/StandardizedVocabularies/DOMAIN.md'}
+```
+
+## CONCEPT_CLASS
+```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_CLASS.md'}
+```
+
+## CONCEPT_RELATIONSHIP
+```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md'}
+```
+
+## RELATIONSHIP
+```{r child = '@mdFilesLocation/StandardizedVocabularies/RELATIONSHIP.md'}
+```
+
+## CONCEPT_SYNONYM
+```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_SYNONYM.md'}
+```
+
+## CONCEPT_ANCESTOR
+```{r child = '@mdFilesLocation/StandardizedVocabularies/CONCEPT_ANCESTOR.md'}
+```
+
+## SOURCE_TO_CONCEPT_MAP
+```{r child = '@mdFilesLocation/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md'}
+```
+
+## DRUG_STRENGTH
+```{r child = '@mdFilesLocation/StandardizedVocabularies/DRUG_STRENGTH.md'}
+```
+
+## COHORT_DEFINITION
+```{r child = '@mdFilesLocation/StandardizedVocabularies/COHORT_DEFINITION.md'}
+```
+
+## ATTRIBUTE_DEFINITION
+```{r child = '@mdFilesLocation/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md'}
+```
+
+# Standardized Metadata
+```{r child = '@mdFilesLocation/StandardizedMetadata/Standardized-Metadata.md'}
+```
+
+## CDM_SOURCE
+```{r child = '@mdFilesLocation/StandardizedMetadata/CDM_SOURCE.md'}
+```
+
+# Standardized Clinical Data Tables
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md'}
+```
+
+## PERSON
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/PERSON.md'}
+```
+
+## OBSERVATION_PERIOD
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md'}
+```
+
+## SPECIMEN
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/SPECIMEN.md'}
+```
+
+## DEATH
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DEATH.md'}
+```
+
+## VISIT_OCCURRENCE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md'}
+```
+
+## PROCEDURE_OCCURRENCE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md'}
+```
+
+## DRUG_EXPOSURE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DRUG_EXPOSURE.md'}
+```
+
+## DEVICE_EXPOSURE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md'}
+```
+
+## CONDITION_OCCURRENCE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md'}
+```
+
+## MEASUREMENT
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/MEASUREMENT.md'}
+```
+
+## NOTE
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/NOTE.md'}
+```
+
+## NOTE_NLP
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/NOTE_NLP.md'}
+```
+
+## OBSERVATION
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/OBSERVATION.md'}
+```
+
+## FACT_RELATIONSHIP
+```{r child = '@mdFilesLocation/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md'}
+```
+
+# Standardized Health System Data Tables
+```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md'}
+```
+
+## LOCATION
+```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/LOCATION.md'}
+```
+
+## CARE_SITE
+```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/CARE_SITE.md'}
+```
+
+## PROVIDER
+```{r child = '@mdFilesLocation/StandardizedHealthSystemDataTables/PROVIDER.md'}
+```
+
+# Standardized Health Economics Data Tables
+```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md'}
+```
+
+## PAYER_PLAN_PERIOD
+```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md'}
+```
+
+## COST
+```{r child = '@mdFilesLocation/StandardizedHealthEconomicsDataTables/COST.md'}
+```
+
+# Standardized Derived Elements
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/Standardized-Derived-Elements.md'}
+```
+
+## COHORT
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/COHORT.md'}
+```
+
+## COHORT_ATTRIBUTE
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/COHORT_ATTRIBUTE.md'}
+```
+
+## DRUG_ERA
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/DRUG_ERA.md'}
+```
+
+## DOSE_ERA
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/DOSE_ERA.md'}
+```
+
+## CONDITION_ERA
+```{r child = '@mdFilesLocation/StandardizedDerivedElements/CONDITION_ERA.md'}
+```

DDLGeneratr/man/writeDDL.Rd

@@ -0,0 +1,14 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/writeDDL.R
+\name{writeDDL}
+\alias{writeDDL}
+\title{Write DDL script}
+\usage{
+writeDDL(targetdialect)
+}
+\arguments{
+\item{targetdialect}{The dialect of the target database. Choices are "oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server"}
+}
+\description{
+Write DDL script
+}

DDLGeneratr/man/writePDF.Rd

@@ -0,0 +1,16 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/writePDF.R
+\name{writePDF}
+\alias{writePDF}
+\title{Write PDF of CDM documentation}
+\usage{
+writePDF(mdFilesLocation, cdmVersion)
+}
+\arguments{
+\item{mdFilesLocation}{The dialect of the target database. Choices are "oracle", "postgresql", "pdw", "redshift", "impala", "netezza", "bigquery", "sql server"}
+
+\item{cdmVersion}{The version of the OMOP Common Data Model for which the pdf document is being written. It should be written without a decimal so v5.3 becomes v5_3}
+}
+\description{
+Write PDF of CDM documentation
+}

DDLGeneratr/output/bigquery/OMOP CDM bigquery ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+bigquery script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+create table concept (
+  concept_id			    integer			  not null ,
+  concept_name			  varchar(255)	not null ,
+  domain_id				    varchar(20)		not null ,
+  vocabulary_id			  varchar(20)		not null ,
+  concept_class_id		varchar(20)		not null ,
+  standard_concept		varchar(1)		null ,
+  concept_code			  varchar(50)		not null ,
+  valid_start_date		date			    not null ,
+  valid_end_date		  date			    not null ,
+  invalid_reason		  varchar(1)		null
+)
+;
+
+
+create table vocabulary (
+  vocabulary_id			    varchar(20)		not null,
+  vocabulary_name		    varchar(255)	not null,
+  vocabulary_reference	varchar(255)	not null,
+  vocabulary_version	  varchar(255)	not null,
+  vocabulary_concept_id	integer			  not null
+)
+;
+
+
+create table domain (
+  domain_id			    varchar(20)		not null,
+  domain_name		    varchar(255)	not null,
+  domain_concept_id	integer			  not null
+)
+;
+
+
+create table concept_class (
+  concept_class_id			    varchar(20)		not null,
+  concept_class_name		    varchar(255)	not null,
+  concept_class_concept_id	integer			  not null
+)
+;
+
+
+create table concept_relationship (
+  concept_id_1			integer			not null,
+  concept_id_2			integer			not null,
+  relationship_id		varchar(20)	not null,
+  valid_start_date	date			  not null,
+  valid_end_date		date			  not null,
+  invalid_reason		varchar(1)	null
+  )
+;
+
+
+create table relationship (
+  relationship_id			    varchar(20)		not null,
+  relationship_name			  varchar(255)	not null,
+  is_hierarchical			    varchar(1)		not null,
+  defines_ancestry			  varchar(1)		not null,
+  reverse_relationship_id	varchar(20)		not null,
+  relationship_concept_id	integer			  not null
+)
+;
+
+
+create table concept_synonym (
+  concept_id			      integer			  not null,
+  concept_synonym_name	varchar(1000)	not null,
+  language_concept_id	  integer			  not null
+)
+;
+
+
+create table concept_ancestor (
+  ancestor_concept_id		    integer		not null,
+  descendant_concept_id		  integer		not null,
+  min_levels_of_separation	integer		not null,
+  max_levels_of_separation	integer		not null
+)
+;
+
+
+create table source_to_concept_map (
+  source_code				      varchar(50)		not null,
+  source_concept_id			  integer			  not null,
+  source_vocabulary_id		varchar(20)		not null,
+  source_code_description	varchar(255)	null,
+  target_concept_id			  integer			  not null,
+  target_vocabulary_id		varchar(20)		not null,
+  valid_start_date			  date			    not null,
+  valid_end_date			    date			    not null,
+  invalid_reason			    varchar(1)		null
+)
+;
+
+
+
+
+create table drug_strength (
+  drug_concept_id				      integer		  not null,
+  ingredient_concept_id			  integer		  not null,
+  amount_value					      float		    null,
+  amount_unit_concept_id		  integer		  null,
+  numerator_value				      float		    null,
+  numerator_unit_concept_id		integer		  null,
+  denominator_value				    float		    null,
+  denominator_unit_concept_id	integer		  null,
+  box_size						        integer		  null,
+  valid_start_date				    date		    not null,
+  valid_end_date				      date		    not null,
+  invalid_reason				      varchar(1)  null
+)
+;
+
+
+
+create table cohort_definition (
+  cohort_definition_id				    integer			  not null,
+  cohort_definition_name			    varchar(255)	not null,
+  cohort_definition_description		varchar(max)	null,
+  definition_type_concept_id		  integer			  not null,
+  cohort_definition_syntax			  varchar(max)	null,
+  subject_concept_id				      integer			  not null,
+  cohort_initiation_date			    date			    null
+)
+;
+
+
+create table attribute_definition (
+  attribute_definition_id		  integer			  not null,
+  attribute_name				      varchar(255)	not null,
+  attribute_description			  varchar(max)	null,
+  attribute_type_concept_id		integer			  not null,
+  attribute_syntax				    varchar(max)	null
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+create table cdm_source
+(
+  cdm_source_name					        varchar(255)	not null ,
+  cdm_source_abbreviation			    varchar(25)		null ,
+  cdm_holder							        varchar(255)	null ,
+  source_description					    varchar(max)	null ,
+  source_documentation_reference	varchar(255)	null ,
+  cdm_etl_reference					      varchar(255)	null ,
+  source_release_date				      date			    null ,
+  cdm_release_date					      date			    null ,
+  cdm_version						          varchar(10)		null ,
+  vocabulary_version					    varchar(20)		null
+)
+;
+
+
+create table metadata
+(
+  metadata_concept_id       integer       not null ,
+  metadata_type_concept_id  integer       not null ,
+  name                      varchar(250)  not null ,
+  value_as_string           nvarchar      null ,
+  value_as_concept_id       integer       null ,
+  metadata_date             date          null ,
+  metadata_datetime         datetime2     null
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+create table person
+(
+  person_id						        integer	  	not null ,
+  gender_concept_id				    integer	  	not null ,
+  year_of_birth					      integer	  	not null ,
+  month_of_birth				      integer	  	null,
+  day_of_birth					      integer	  	null,
+  birth_datetime				      datetime2	  null,
+  race_concept_id				      integer		  not null,
+  ethnicity_concept_id			  integer	  	not null,
+  location_id					        integer		  null,
+  provider_id					        integer		  null,
+  care_site_id					      integer		  null,
+  person_source_value			    varchar(50) null,
+  gender_source_value			    varchar(50) null,
+  gender_source_concept_id	  integer		  null,
+  race_source_value				    varchar(50) null,
+  race_source_concept_id		  integer		  null,
+  ethnicity_source_value		  varchar(50) null,
+  ethnicity_source_concept_id	integer		  null
+)
+;
+
+
+create table observation_period
+(
+  observation_period_id				      integer		not null ,
+  person_id							            integer		not null ,
+  observation_period_start_date		  date		  not null ,
+  observation_period_end_date		    date		  not null ,
+  period_type_concept_id			      integer		not null
+)
+;
+
+
+create table specimen
+(
+  specimen_id						      integer			not null ,
+  person_id							      integer			not null ,
+  specimen_concept_id				  integer			not null ,
+  specimen_type_concept_id		integer			not null ,
+  specimen_date						    date			  not null ,
+  specimen_datetime					  datetime2		null ,
+  quantity							      float			  null ,
+  unit_concept_id					    integer			null ,
+  anatomic_site_concept_id		integer			null ,
+  disease_status_concept_id		integer			null ,
+  specimen_source_id				  varchar(50)	null ,
+  specimen_source_value				varchar(50)	null ,
+  unit_source_value					  varchar(50)	null ,
+  anatomic_site_source_value	varchar(50)	null ,
+  disease_status_source_value varchar(50)	null
+)
+;
+
+
+
+create table death
+(
+  person_id							  integer			not null ,
+  death_date							date			  not null ,
+  death_datetime					datetime2		null ,
+  death_type_concept_id   integer			not null ,
+  cause_concept_id			  integer			null ,
+  cause_source_value			varchar(50)	null,
+  cause_source_concept_id integer			null
+)
+;
+
+
+create table visit_occurrence
+(
+  visit_occurrence_id			      integer			not null ,
+  person_id						          integer			not null ,
+  visit_concept_id				      integer			not null ,
+  visit_start_date				      date			  not null ,
+  visit_start_datetime				  datetime2		null ,
+  visit_end_date					      date			  not null ,
+  visit_end_datetime					  datetime2		null ,
+  visit_type_concept_id			    integer			not null ,
+  provider_id					          integer			null,
+  care_site_id					        integer			null,
+  visit_source_value				    varchar(50)	null,
+  visit_source_concept_id		    integer			null
+  admitting_source_concept_id	  integer			null ,
+  admitting_source_value		    varchar(50)	null ,
+  discharge_to_concept_id		    integer(50)	null ,
+  discharge_to_source_value		  varchar(50)	null ,
+  preceding_visit_occurrence_id	integer			null
+)
+;
+
+
+create table visit_detail
+(
+  visit_detail_id             integer     not null ,
+  person_id                   integer     not null ,
+  visit_detail_concept_id     integer     not null ,
+  visit_start_date            date        not null ,
+  visit_start_datetime        datetime2   null ,
+  visit_end_date              date        not null ,
+  visit_end_datetime          datetime2   null ,
+  visit_type_concept_id       integer     not null ,
+  provider_id                 integer     null ,
+  care_site_id                integer     null ,
+  admitting_source_concept_id integer     null ,
+  discharge_to_concept_id     integer     null ,
+  preceding_visit_detail_id   integer     null ,
+  visit_source_value          varchar(50) null ,
+  visit_source_concept_id     integer     null ,
+  admitting_source_value      varchar(50) null ,
+  discharge_to_source_value   varchar(50) null ,
+  visit_detail_parent_id      integer     null ,
+  visit_occurrence_id         integer     not null
+)
+;
+
+
+create table procedure_occurrence
+(
+  procedure_occurrence_id		  integer			not null ,
+  person_id						        integer			not null ,
+  procedure_concept_id			  integer			not null ,
+  procedure_date				      date			  not null ,
+  procedure_datetime			    datetime2		null ,
+  procedure_type_concept_id		integer			not null ,
+  modifier_concept_id			    integer			null ,
+  quantity						        integer			null ,
+  provider_id					        integer			null ,
+  visit_occurrence_id			    integer			null ,
+  visit_detail_id             integer     null ,
+  procedure_source_value		  varchar(50)	null ,
+  procedure_source_concept_id	integer			null ,
+  modifier_source_value		   varchar(50)	null
+)
+;
+
+
+create table drug_exposure
+(
+  drug_exposure_id				      integer			  not null ,
+  person_id						          integer			  not null ,
+  drug_concept_id				        integer			  not null ,
+  drug_exposure_start_date		  date			    not null ,
+  drug_exposure_start_datetime  datetime2		  null ,
+  drug_exposure_end_date		    date			    not null ,
+  drug_exposure_end_datetime	  datetime2		  null ,
+  verbatim_end_date				      date			    null ,
+  drug_type_concept_id			    integer			  not null ,
+  stop_reason					          varchar(20)		null ,
+  refills						            integer		  	null ,
+  quantity						          float			    null ,
+  days_supply					          integer		  	null ,
+  sig							              varchar(max)	null ,
+  route_concept_id				      integer			  null ,
+  lot_number					          varchar(50)	  null ,
+  provider_id					          integer			  null ,
+  visit_occurrence_id			      integer			  null ,
+  visit_detail_id               integer       null ,
+  drug_source_value				      varchar(50)	  null ,
+  drug_source_concept_id		    integer			  null ,
+  route_source_value			      varchar(50)	  null ,
+  dose_unit_source_value		    varchar(50)	  null
+)
+;
+
+
+create table device_exposure
+(
+  device_exposure_id			        integer		  	not null ,
+  person_id						            integer			  not null ,
+  device_concept_id			        	integer			  not null ,
+  device_exposure_start_date	    date			    not null ,
+  device_exposure_start_datetime  datetime2		  null ,
+  device_exposure_end_date		    date			    null ,
+  device_exposure_end_datetime    datetime2		  null ,
+  device_type_concept_id		      integer			  not null ,
+  unique_device_id			        	varchar(50)		null ,
+  quantity						            integer			  null ,
+  provider_id					            integer			  null ,
+  visit_occurrence_id			        integer			  null ,
+  visit_detail_id                 integer       null ,
+  device_source_value			        varchar(100)	null ,
+  device_source_concept_id		    integer			  null
+)
+;
+
+
+create table condition_occurrence
+(
+  condition_occurrence_id		    integer			not null ,
+  person_id						          integer			not null ,
+  condition_concept_id			    integer			not null ,
+  condition_start_date			    date			  not null ,
+  condition_start_datetime		  datetime2		null ,
+  condition_end_date			      date			  null ,
+  condition_end_datetime		    datetime2		null ,
+  condition_type_concept_id		  integer			not null ,
+  stop_reason					          varchar(20)	null ,
+  provider_id					          integer			null ,
+  visit_occurrence_id			      integer			null ,
+  visit_detail_id               integer     null ,
+  condition_source_value		    varchar(50)	null ,
+  condition_source_concept_id	  integer			null ,
+  condition_status_source_value	varchar(50)	null ,
+  condition_status_concept_id	  integer			null
+)
+;
+
+
+create table measurement
+(
+  measurement_id				        integer			not null ,
+  person_id						          integer			not null ,
+  measurement_concept_id		    integer			not null ,
+  measurement_date				      date			  not null ,
+  measurement_time              varchar(10) null ,
+  measurement_datetime			    datetime2		null ,
+  measurement_type_concept_id	  integer			not null ,
+  operator_concept_id			      integer			null ,
+  value_as_number				        float			  null ,
+  value_as_concept_id			      integer			null ,
+  unit_concept_id				        integer			null ,
+  range_low					          	float			  null ,
+  range_high					          float			  null ,
+  provider_id					          integer			null ,
+  visit_occurrence_id			      integer			null ,
+  visit_detail_id               integer     null ,
+  measurement_source_value		  varchar(50)	null ,
+  measurement_source_concept_id	integer			null ,
+  unit_source_value				      varchar(50)	null ,
+  value_source_value			      varchar(50)	null
+)
+;
+
+
+
+create table note
+(
+  note_id						    integer			  not null ,
+  person_id						  integer			  not null ,
+  note_date						  date			    not null ,
+  note_datetime					datetime2		  null ,
+  note_type_concept_id	integer			  not null ,
+  note_class_concept_id integer			  not null ,
+  note_title					  varchar(250)	null ,
+  note_text						  varchar(max)  null ,
+  encoding_concept_id		integer			  not null ,
+  language_concept_id		integer			  not null ,
+  provider_id					  integer			  null ,
+  visit_occurrence_id		integer			  null ,
+  visit_detail_id       integer       null ,
+  note_source_value			varchar(50)		null
+)
+;
+
+
+
+create table note_nlp
+(
+  note_nlp_id					        bigint			  not null ,
+  note_id						          integer			  not null ,
+  section_concept_id			    integer			  null ,
+  snippet						          varchar(250)	null ,
+  offset						          varchar(250)	null ,
+  lexical_variant				      varchar(250)	not null ,
+  note_nlp_concept_id			    integer			  null ,
+  note_nlp_source_concept_id  integer			  null ,
+  nlp_system					        varchar(250)	null ,
+  nlp_date						        date			    not null ,
+  nlp_datetime					      datetime2		  null ,
+  term_exists					        varchar(1)		null ,
+  term_temporal					      varchar(50)		null ,
+  term_modifiers				      varchar(2000)	null
+)
+;
+
+
+
+create table observation
+(
+  observation_id					      integer			not null ,
+  person_id						          integer			not null ,
+  observation_concept_id			  integer			not null ,
+  observation_date				      date			  not null ,
+  observation_datetime				  datetime2		null ,
+  observation_type_concept_id	  integer			not null ,
+  value_as_number				        float			  null ,
+  value_as_string				        varchar(60)	null ,
+  value_as_concept_id			      integer			null ,
+  qualifier_concept_id			    integer			null ,
+  unit_concept_id				        integer			null ,
+  provider_id					          integer			null ,
+  visit_occurrence_id			      integer			null ,
+  visit_detail_id               integer     null ,
+  observation_source_value		  varchar(50)	null ,
+  observation_source_concept_id	integer			null ,
+  unit_source_value				      varchar(50)	null ,
+  qualifier_source_value			  varchar(50)	null
+)
+;
+
+
+
+create table fact_relationship
+(
+  domain_concept_id_1			integer			not null ,
+  fact_id_1						    integer			not null ,
+  domain_concept_id_2			integer			not null ,
+  fact_id_2						    integer			not null ,
+  relationship_concept_id	integer			not null
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+create table location
+(
+  location_id					  integer			  not null ,
+  address_1						  varchar(50)		null ,
+  address_2						  varchar(50)		null ,
+  city							    varchar(50)		null ,
+  state							    varchar(2)		null ,
+  zip							      varchar(9)		null ,
+  county							  varchar(20)		null ,
+  location_source_value varchar(50)		null
+)
+;
+
+
+
+create table care_site
+(
+  care_site_id						      integer			  not null ,
+  care_site_name						    varchar(255)  null ,
+  place_of_service_concept_id	  integer			  null ,
+  location_id						        integer			  null ,
+  care_site_source_value			  varchar(50)		null ,
+  place_of_service_source_value varchar(50)		null
+)
+;
+
+
+
+create table provider
+(
+  provider_id					        integer			  not null ,
+  provider_name					      varchar(255)	null ,
+  npi							            varchar(20)		null ,
+  dea							            varchar(20)		null ,
+  specialty_concept_id			  integer			  null ,
+  care_site_id					      integer			  null ,
+  year_of_birth					      integer			  null ,
+  gender_concept_id				    integer			  null ,
+  provider_source_value			  varchar(50)		null ,
+  specialty_source_value			varchar(50)		null ,
+  specialty_source_concept_id	integer			  null ,
+  gender_source_value			    varchar(50)		null ,
+  gender_source_concept_id		integer			  null
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+create table payer_plan_period
+(
+  payer_plan_period_id			    integer			  not null ,
+  person_id						          integer			  not null ,
+  payer_plan_period_start_date  date			    not null ,
+  payer_plan_period_end_date		date			    not null ,
+  payer_concept_id              integer       null ,
+  payer_source_value				    varchar(50)	  null ,
+  payer_source_concept_id       integer       null ,
+  plan_concept_id               integer       null ,
+  plan_source_value				      varchar(50)	  null ,
+  plan_source_concept_id        integer       null ,
+  sponsor_concept_id            integer       null ,
+  sponsor_source_value          varchar(50)   null ,
+  sponsor_source_concept_id     integer       null ,
+  family_source_value			      varchar(50)	  null ,
+  stop_reason_concept_id        integer       null ,
+  stop_reason_source_value      integer       null ,
+  stop_reason_source_concept_id integer       null
+)
+;
+
+
+create table cost
+(
+  cost_id					          integer	    not null ,
+  cost_event_id             integer     not null ,
+  cost_domain_id            varchar(20) not null ,
+  cost_type_concept_id      integer     not null ,
+  currency_concept_id			  integer			null ,
+  total_charge						  float			  null ,
+  total_cost						    float			  null ,
+  total_paid						    float			  null ,
+  paid_by_payer					    float			  null ,
+  paid_by_patient						float			  null ,
+  paid_patient_copay				float			  null ,
+  paid_patient_coinsurance  float			  null ,
+  paid_patient_deductible		float			  null ,
+  paid_by_primary						float			  null ,
+  paid_ingredient_cost			float			  null ,
+  paid_dispensing_fee				float			  null ,
+  payer_plan_period_id			integer			null ,
+  amount_allowed		        float			  null ,
+  revenue_code_concept_id		integer			null ,
+  reveue_code_source_value  varchar(50) null,
+  drg_concept_id			      integer		  null,
+  drg_source_value			    varchar(3)	null
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+create table cohort
+(
+  cohort_definition_id	integer		not null ,
+  subject_id						integer		not null ,
+  cohort_start_date			date			not null ,
+  cohort_end_date				date			not null
+)
+;
+
+
+create table cohort_attribute
+(
+  cohort_definition_id		integer		not null ,
+  cohort_start_date				date			not null ,
+  cohort_end_date				  date			not null ,
+  subject_id						  integer		not null ,
+  attribute_definition_id integer		not null ,
+  value_as_number				  float			null ,
+  value_as_concept_id			integer		null
+)
+;
+
+
+
+
+create table drug_era
+(
+  drug_era_id					integer			not null ,
+  person_id						integer			not null ,
+  drug_concept_id			integer			not null ,
+  drug_era_start_date	date			  not null ,
+  drug_era_end_date		date			  not null ,
+  drug_exposure_count	integer			null ,
+  gap_days						integer			null
+)
+;
+
+
+create table dose_era
+(
+  dose_era_id					  integer			not null ,
+  person_id						  integer			not null ,
+  drug_concept_id				integer			not null ,
+  unit_concept_id				integer			not null ,
+  dose_value						float			  not null ,
+  dose_era_start_date		date			  not null ,
+  dose_era_end_date	    date			  not null
+)
+;
+
+
+
+
+create table condition_era
+(
+  condition_era_id				    integer			not null ,
+  person_id						        integer			not null ,
+  condition_concept_id			  integer			not null ,
+  condition_era_start_date		date			  not null ,
+  condition_era_end_date			date			  not null ,
+  condition_occurrence_count	integer			null
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/output/impala/OMOP CDM impala ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+impala script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept (
+  concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255) ,
+  domain_id				    VARCHAR(20) ,
+  vocabulary_id			  VARCHAR(20) ,
+  concept_class_id		VARCHAR(20) ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50) ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+;
+
+
+CREATE TABLE vocabulary (
+  vocabulary_id			    VARCHAR(20),
+  vocabulary_name		    VARCHAR(255),
+  vocabulary_reference	VARCHAR(255),
+  vocabulary_version	  VARCHAR(255),
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE domain (
+  domain_id			    VARCHAR(20),
+  domain_name		    VARCHAR(255),
+  domain_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_class (
+  concept_class_id			    VARCHAR(20),
+  concept_class_name		    VARCHAR(255),
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_relationship (
+  concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20),
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+;
+
+
+CREATE TABLE relationship (
+  relationship_id			    VARCHAR(20),
+  relationship_name			  VARCHAR(255),
+  is_hierarchical			    VARCHAR(1),
+  defines_ancestry			  VARCHAR(1),
+  reverse_relationship_id	VARCHAR(20),
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_synonym (
+  concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000),
+  language_concept_id	  INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_ancestor (
+  ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE source_to_concept_map (
+  source_code				      VARCHAR(50),
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20),
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20),
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_strength (
+  drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      FLOAT		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      FLOAT		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    FLOAT		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+;
+
+
+
+CREATE TABLE cohort_definition (
+  cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255),
+  cohort_definition_description		VARCHAR(MAX)	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  VARCHAR(MAX)	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+;
+
+
+CREATE TABLE attribute_definition (
+  attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255),
+  attribute_description			  VARCHAR(MAX)	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    VARCHAR(MAX)	NULL
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+(
+  cdm_source_name					        VARCHAR(255) ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    VARCHAR(MAX)	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+;
+
+
+CREATE TABLE metadata
+(
+  metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250) ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+(
+  person_id						        INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+;
+
+
+CREATE TABLE observation_period
+(
+  observation_period_id				      INTEGER		NOT NULL ,
+  person_id							            INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE specimen
+(
+  specimen_id						      INTEGER			NOT NULL ,
+  person_id							      INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      FLOAT			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE death
+(
+  person_id							  INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_occurrence
+(
+  visit_occurrence_id			      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_detail
+(
+  visit_detail_id             INTEGER     NOT NULL ,
+  person_id                   INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+;
+
+
+CREATE TABLE procedure_occurrence
+(
+  procedure_occurrence_id		  INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+;
+
+
+CREATE TABLE drug_exposure
+(
+  drug_exposure_id				      INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          FLOAT			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              VARCHAR(MAX)	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+;
+
+
+CREATE TABLE device_exposure
+(
+  device_exposure_id			        INTEGER		  	NOT NULL ,
+  person_id						            INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+;
+
+
+CREATE TABLE condition_occurrence
+(
+  condition_occurrence_id		    INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+;
+
+
+CREATE TABLE measurement
+(
+  measurement_id				        INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	FLOAT			  NULL ,
+  range_high					          FLOAT			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE note
+(
+  note_id						    INTEGER			  NOT NULL ,
+  person_id						  INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  VARCHAR(MAX)  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE note_nlp
+(
+  note_nlp_id					        BIGINT ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250) ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+;
+
+
+
+CREATE TABLE observation
+(
+  observation_id					      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE fact_relationship
+(
+  domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+(
+  location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE care_site
+(
+  care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE provider
+(
+  provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+(
+  payer_plan_period_id			    INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+;
+
+
+CREATE TABLE cost
+(
+  cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  FLOAT			  NULL ,
+  total_cost						    FLOAT			  NULL ,
+  total_paid						    FLOAT			  NULL ,
+  paid_by_payer					    FLOAT			  NULL ,
+  paid_by_patient						FLOAT			  NULL ,
+  paid_patient_copay				FLOAT			  NULL ,
+  paid_patient_coinsurance  FLOAT			  NULL ,
+  paid_patient_deductible		FLOAT			  NULL ,
+  paid_by_primary						FLOAT			  NULL ,
+  paid_ingredient_cost			FLOAT			  NULL ,
+  paid_dispensing_fee				FLOAT			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        FLOAT			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+(
+  cohort_definition_id	INTEGER		NOT NULL ,
+  subject_id						INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+;
+
+
+CREATE TABLE cohort_attribute
+(
+  cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+  subject_id						  INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  FLOAT			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_era
+(
+  drug_era_id					INTEGER			NOT NULL ,
+  person_id						INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+;
+
+
+CREATE TABLE dose_era
+(
+  dose_era_id					  INTEGER			NOT NULL ,
+  person_id						  INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						FLOAT ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+;
+
+
+
+
+CREATE TABLE condition_era
+(
+  condition_era_id				    INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/output/netezza/OMOP CDM netezza ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+netezza script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept (
+  concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+;
+
+
+CREATE TABLE vocabulary (
+  vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE domain (
+  domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_class (
+  concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_relationship (
+  concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+;
+
+
+CREATE TABLE relationship (
+  relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_synonym (
+  concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_ancestor (
+  ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE source_to_concept_map (
+  source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_strength (
+  drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      NUMERIC		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      NUMERIC		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    NUMERIC		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+;
+
+
+
+CREATE TABLE cohort_definition (
+  cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		VARCHAR(1000)	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  VARCHAR(1000)	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+;
+
+
+CREATE TABLE attribute_definition (
+  attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  VARCHAR(1000)	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    VARCHAR(1000)	NULL
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+(
+  cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    VARCHAR(1000)	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+;
+
+
+CREATE TABLE metadata
+(
+  metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+(
+  person_id						        INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+;
+
+
+CREATE TABLE observation_period
+(
+  observation_period_id				      INTEGER		NOT NULL ,
+  person_id							            INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE specimen
+(
+  specimen_id						      INTEGER			NOT NULL ,
+  person_id							      INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      NUMERIC			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE death
+(
+  person_id							  INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_occurrence
+(
+  visit_occurrence_id			      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_detail
+(
+  visit_detail_id             INTEGER     NOT NULL ,
+  person_id                   INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+;
+
+
+CREATE TABLE procedure_occurrence
+(
+  procedure_occurrence_id		  INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+;
+
+
+CREATE TABLE drug_exposure
+(
+  drug_exposure_id				      INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          NUMERIC			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              VARCHAR(1000)	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+;
+
+
+CREATE TABLE device_exposure
+(
+  device_exposure_id			        INTEGER		  	NOT NULL ,
+  person_id						            INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+;
+
+
+CREATE TABLE condition_occurrence
+(
+  condition_occurrence_id		    INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+;
+
+
+CREATE TABLE measurement
+(
+  measurement_id				        INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        NUMERIC			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	NUMERIC			  NULL ,
+  range_high					          NUMERIC			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE note
+(
+  note_id						    INTEGER			  NOT NULL ,
+  person_id						  INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  VARCHAR(1000)  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE note_nlp
+(
+  note_nlp_id					        BIGINT			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+;
+
+
+
+CREATE TABLE observation
+(
+  observation_id					      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        NUMERIC			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE fact_relationship
+(
+  domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+(
+  location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE care_site
+(
+  care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE provider
+(
+  provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+(
+  payer_plan_period_id			    INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+;
+
+
+CREATE TABLE cost
+(
+  cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  NUMERIC			  NULL ,
+  total_cost						    NUMERIC			  NULL ,
+  total_paid						    NUMERIC			  NULL ,
+  paid_by_payer					    NUMERIC			  NULL ,
+  paid_by_patient						NUMERIC			  NULL ,
+  paid_patient_copay				NUMERIC			  NULL ,
+  paid_patient_coinsurance  NUMERIC			  NULL ,
+  paid_patient_deductible		NUMERIC			  NULL ,
+  paid_by_primary						NUMERIC			  NULL ,
+  paid_ingredient_cost			NUMERIC			  NULL ,
+  paid_dispensing_fee				NUMERIC			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        NUMERIC			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+(
+  cohort_definition_id	INTEGER		NOT NULL ,
+  subject_id						INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+;
+
+
+CREATE TABLE cohort_attribute
+(
+  cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+  subject_id						  INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  NUMERIC			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_era
+(
+  drug_era_id					INTEGER			NOT NULL ,
+  person_id						INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+;
+
+
+CREATE TABLE dose_era
+(
+  dose_era_id					  INTEGER			NOT NULL ,
+  person_id						  INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						NUMERIC			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+;
+
+
+
+
+CREATE TABLE condition_era
+(
+  condition_era_id				    INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/output/oracle/OMOP CDM oracle ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+oracle script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept (
+  concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+;
+
+
+CREATE TABLE vocabulary (
+  vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE domain (
+  domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_class (
+  concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_relationship (
+  concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+;
+
+
+CREATE TABLE relationship (
+  relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_synonym (
+  concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_ancestor (
+  ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE source_to_concept_map (
+  source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_strength (
+  drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      FLOAT		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      FLOAT		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    FLOAT		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+;
+
+
+
+CREATE TABLE cohort_definition (
+  cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		CLOB	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  CLOB	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+;
+
+
+CREATE TABLE attribute_definition (
+  attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  CLOB	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    CLOB	NULL
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+(
+  cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    CLOB	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+;
+
+
+CREATE TABLE metadata
+(
+  metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+(
+  person_id						        INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+;
+
+
+CREATE TABLE observation_period
+(
+  observation_period_id				      INTEGER		NOT NULL ,
+  person_id							            INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE specimen
+(
+  specimen_id						      INTEGER			NOT NULL ,
+  person_id							      INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      FLOAT			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE death
+(
+  person_id							  INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_occurrence
+(
+  visit_occurrence_id			      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_detail
+(
+  visit_detail_id             INTEGER     NOT NULL ,
+  person_id                   INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+;
+
+
+CREATE TABLE procedure_occurrence
+(
+  procedure_occurrence_id		  INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+;
+
+
+CREATE TABLE drug_exposure
+(
+  drug_exposure_id				      INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          FLOAT			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              CLOB	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+;
+
+
+CREATE TABLE device_exposure
+(
+  device_exposure_id			        INTEGER		  	NOT NULL ,
+  person_id						            INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+;
+
+
+CREATE TABLE condition_occurrence
+(
+  condition_occurrence_id		    INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+;
+
+
+CREATE TABLE measurement
+(
+  measurement_id				        INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	FLOAT			  NULL ,
+  range_high					          FLOAT			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE note
+(
+  note_id						    INTEGER			  NOT NULL ,
+  person_id						  INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  CLOB  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE note_nlp
+(
+  note_nlp_id					        NUMBER(19)			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+;
+
+
+
+CREATE TABLE observation
+(
+  observation_id					      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE fact_relationship
+(
+  domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+(
+  location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE care_site
+(
+  care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE provider
+(
+  provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+(
+  payer_plan_period_id			    INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+;
+
+
+CREATE TABLE cost
+(
+  cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  FLOAT			  NULL ,
+  total_cost						    FLOAT			  NULL ,
+  total_paid						    FLOAT			  NULL ,
+  paid_by_payer					    FLOAT			  NULL ,
+  paid_by_patient						FLOAT			  NULL ,
+  paid_patient_copay				FLOAT			  NULL ,
+  paid_patient_coinsurance  FLOAT			  NULL ,
+  paid_patient_deductible		FLOAT			  NULL ,
+  paid_by_primary						FLOAT			  NULL ,
+  paid_ingredient_cost			FLOAT			  NULL ,
+  paid_dispensing_fee				FLOAT			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        FLOAT			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+(
+  cohort_definition_id	INTEGER		NOT NULL ,
+  subject_id						INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+;
+
+
+CREATE TABLE cohort_attribute
+(
+  cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+  subject_id						  INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  FLOAT			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_era
+(
+  drug_era_id					INTEGER			NOT NULL ,
+  person_id						INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+;
+
+
+CREATE TABLE dose_era
+(
+  dose_era_id					  INTEGER			NOT NULL ,
+  person_id						  INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						FLOAT			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+;
+
+
+
+
+CREATE TABLE condition_era
+(
+  condition_era_id				    INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/output/pdw/OMOP CDM pdw ddl.txt

@@ -0,0 +1,696 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+pdw script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  concept  (concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  vocabulary  (vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  domain  (domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  concept_class  (concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  concept_relationship  (concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  relationship  (relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  concept_synonym  (concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  concept_ancestor  (ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  source_to_concept_map  (source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  drug_strength  (drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      FLOAT		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      FLOAT		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    FLOAT		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  cohort_definition  (cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		VARCHAR(1000)	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  VARCHAR(1000)	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  attribute_definition  (attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  VARCHAR(1000)	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    VARCHAR(1000)	NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  cdm_source
+ (cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    VARCHAR(1000)	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  metadata
+ (metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  person
+ ( person_id INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  observation_period
+ (observation_period_id				      INTEGER		NOT NULL ,
+   person_id INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  specimen
+ (specimen_id						      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      FLOAT			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  death
+ ( person_id INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  visit_occurrence
+ (visit_occurrence_id			      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  visit_detail
+ (visit_detail_id             INTEGER     NOT NULL ,
+   person_id INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  procedure_occurrence
+ (procedure_occurrence_id		  INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  drug_exposure
+ (drug_exposure_id				      INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          FLOAT			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              VARCHAR(1000)	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  device_exposure
+ (device_exposure_id			        INTEGER		  	NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  condition_occurrence
+ (condition_occurrence_id		    INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  measurement
+ (measurement_id				        INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	FLOAT			  NULL ,
+  range_high					          FLOAT			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  note
+ (note_id						    INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  VARCHAR(1000)  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  note_nlp
+ (note_nlp_id					        BIGINT			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  observation
+ (observation_id					      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  fact_relationship
+ (domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  location
+ (location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  care_site
+ (care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  provider
+ (provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  payer_plan_period
+ (payer_plan_period_id			    INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  cost
+ (cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  FLOAT			  NULL ,
+  total_cost						    FLOAT			  NULL ,
+  total_paid						    FLOAT			  NULL ,
+  paid_by_payer					    FLOAT			  NULL ,
+  paid_by_patient						FLOAT			  NULL ,
+  paid_patient_copay				FLOAT			  NULL ,
+  paid_patient_coinsurance  FLOAT			  NULL ,
+  paid_patient_deductible		FLOAT			  NULL ,
+  paid_by_primary						FLOAT			  NULL ,
+  paid_ingredient_cost			FLOAT			  NULL ,
+  paid_dispensing_fee				FLOAT			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        FLOAT			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+WITH (DISTRIBUTION = REPLICATE);
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  cohort
+ (cohort_definition_id	INTEGER		NOT NULL ,
+   subject_id INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+WITH (DISTRIBUTION = HASH(subject_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  cohort_attribute
+ (cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+   subject_id INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  FLOAT			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+WITH (DISTRIBUTION = HASH(subject_id));
+
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  drug_era
+ (drug_era_id					INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  dose_era
+ (dose_era_id					  INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						FLOAT			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+
+IF XACT_STATE() = 1 COMMIT; CREATE TABLE  condition_era
+ (condition_era_id				    INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+WITH (DISTRIBUTION = HASH(person_id));
+
+
+
+
+
+
+

DDLGeneratr/output/postgresql/OMOP CDM postgresql ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+postgresql script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept (
+  concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+;
+
+
+CREATE TABLE vocabulary (
+  vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE domain (
+  domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_class (
+  concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_relationship (
+  concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+;
+
+
+CREATE TABLE relationship (
+  relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_synonym (
+  concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_ancestor (
+  ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE source_to_concept_map (
+  source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_strength (
+  drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      NUMERIC		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      NUMERIC		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    NUMERIC		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+;
+
+
+
+CREATE TABLE cohort_definition (
+  cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		TEXT	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  TEXT	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+;
+
+
+CREATE TABLE attribute_definition (
+  attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  TEXT	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    TEXT	NULL
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+(
+  cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    TEXT	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+;
+
+
+CREATE TABLE metadata
+(
+  metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+(
+  person_id						        INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+;
+
+
+CREATE TABLE observation_period
+(
+  observation_period_id				      INTEGER		NOT NULL ,
+  person_id							            INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE specimen
+(
+  specimen_id						      INTEGER			NOT NULL ,
+  person_id							      INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      NUMERIC			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE death
+(
+  person_id							  INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_occurrence
+(
+  visit_occurrence_id			      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_detail
+(
+  visit_detail_id             INTEGER     NOT NULL ,
+  person_id                   INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+;
+
+
+CREATE TABLE procedure_occurrence
+(
+  procedure_occurrence_id		  INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+;
+
+
+CREATE TABLE drug_exposure
+(
+  drug_exposure_id				      INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          NUMERIC			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              TEXT	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+;
+
+
+CREATE TABLE device_exposure
+(
+  device_exposure_id			        INTEGER		  	NOT NULL ,
+  person_id						            INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+;
+
+
+CREATE TABLE condition_occurrence
+(
+  condition_occurrence_id		    INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+;
+
+
+CREATE TABLE measurement
+(
+  measurement_id				        INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        NUMERIC			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	NUMERIC			  NULL ,
+  range_high					          NUMERIC			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE note
+(
+  note_id						    INTEGER			  NOT NULL ,
+  person_id						  INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  TEXT  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE note_nlp
+(
+  note_nlp_id					        BIGINT			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+;
+
+
+
+CREATE TABLE observation
+(
+  observation_id					      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        NUMERIC			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE fact_relationship
+(
+  domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+(
+  location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE care_site
+(
+  care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE provider
+(
+  provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+(
+  payer_plan_period_id			    INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+;
+
+
+CREATE TABLE cost
+(
+  cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  NUMERIC			  NULL ,
+  total_cost						    NUMERIC			  NULL ,
+  total_paid						    NUMERIC			  NULL ,
+  paid_by_payer					    NUMERIC			  NULL ,
+  paid_by_patient						NUMERIC			  NULL ,
+  paid_patient_copay				NUMERIC			  NULL ,
+  paid_patient_coinsurance  NUMERIC			  NULL ,
+  paid_patient_deductible		NUMERIC			  NULL ,
+  paid_by_primary						NUMERIC			  NULL ,
+  paid_ingredient_cost			NUMERIC			  NULL ,
+  paid_dispensing_fee				NUMERIC			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        NUMERIC			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+(
+  cohort_definition_id	INTEGER		NOT NULL ,
+  subject_id						INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+;
+
+
+CREATE TABLE cohort_attribute
+(
+  cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+  subject_id						  INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  NUMERIC			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_era
+(
+  drug_era_id					INTEGER			NOT NULL ,
+  person_id						INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+;
+
+
+CREATE TABLE dose_era
+(
+  dose_era_id					  INTEGER			NOT NULL ,
+  person_id						  INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						NUMERIC			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+;
+
+
+
+
+CREATE TABLE condition_era
+(
+  condition_era_id				    INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/output/redshift/OMOP CDM redshift ddl.txt

@@ -0,0 +1,696 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+redshift script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept  (concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE vocabulary  (vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE domain  (domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE concept_class  (concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE concept_relationship  (concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+DISTSTYLE ALL;
+
+
+CREATE TABLE relationship  (relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE concept_synonym  (concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE concept_ancestor  (ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE source_to_concept_map  (source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+DISTSTYLE ALL;
+
+
+
+
+CREATE TABLE drug_strength  (drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      FLOAT		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      FLOAT		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    FLOAT		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+DISTSTYLE ALL;
+
+
+
+CREATE TABLE cohort_definition  (cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		VARCHAR(MAX)	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  VARCHAR(MAX)	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE attribute_definition  (attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  VARCHAR(MAX)	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    VARCHAR(MAX)	NULL
+)
+DISTSTYLE ALL;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+ (cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    VARCHAR(MAX)	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+DISTSTYLE ALL;
+
+
+CREATE TABLE metadata
+ (metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         TIMESTAMP     NULL
+)
+DISTSTYLE ALL;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+ ( person_id INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      TIMESTAMP	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE observation_period
+ (observation_period_id				      INTEGER		NOT NULL ,
+   person_id INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE specimen
+ (specimen_id						      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  TIMESTAMP		NULL ,
+  quantity							      FLOAT			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+DISTKEY(person_id);
+
+
+
+CREATE TABLE death
+ ( person_id INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					TIMESTAMP		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE visit_occurrence
+ (visit_occurrence_id			      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  TIMESTAMP		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  TIMESTAMP		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE visit_detail
+ (visit_detail_id             INTEGER     NOT NULL ,
+   person_id INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        TIMESTAMP   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          TIMESTAMP   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE procedure_occurrence
+ (procedure_occurrence_id		  INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    TIMESTAMP		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE drug_exposure
+ (drug_exposure_id				      INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  TIMESTAMP		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  TIMESTAMP		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          FLOAT			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              VARCHAR(MAX)	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE device_exposure
+ (device_exposure_id			        INTEGER		  	NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  TIMESTAMP		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    TIMESTAMP		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE condition_occurrence
+ (condition_occurrence_id		    INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  TIMESTAMP		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    TIMESTAMP		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE measurement
+ (measurement_id				        INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    TIMESTAMP		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	FLOAT			  NULL ,
+  range_high					          FLOAT			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+DISTKEY(person_id);
+
+
+
+CREATE TABLE note
+ (note_id						    INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					TIMESTAMP		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  VARCHAR(MAX)  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+DISTKEY(person_id);
+
+
+
+CREATE TABLE note_nlp
+ (note_nlp_id					        BIGINT			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      TIMESTAMP		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+DISTSTYLE ALL;
+
+
+
+CREATE TABLE observation
+ (observation_id					      INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  TIMESTAMP		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+DISTKEY(person_id);
+
+
+
+CREATE TABLE fact_relationship
+ (domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+DISTSTYLE ALL;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+ (location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+DISTSTYLE ALL;
+
+
+
+CREATE TABLE care_site
+ (care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+DISTSTYLE ALL;
+
+
+
+CREATE TABLE provider
+ (provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+DISTSTYLE ALL;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+ (payer_plan_period_id			    INTEGER			  NOT NULL ,
+   person_id INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE cost
+ (cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  FLOAT			  NULL ,
+  total_cost						    FLOAT			  NULL ,
+  total_paid						    FLOAT			  NULL ,
+  paid_by_payer					    FLOAT			  NULL ,
+  paid_by_patient						FLOAT			  NULL ,
+  paid_patient_copay				FLOAT			  NULL ,
+  paid_patient_coinsurance  FLOAT			  NULL ,
+  paid_patient_deductible		FLOAT			  NULL ,
+  paid_by_primary						FLOAT			  NULL ,
+  paid_ingredient_cost			FLOAT			  NULL ,
+  paid_dispensing_fee				FLOAT			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        FLOAT			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+DISTSTYLE ALL;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+ (cohort_definition_id	INTEGER		NOT NULL ,
+   subject_id INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+DISTKEY(subject_id);
+
+
+CREATE TABLE cohort_attribute
+ (cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+   subject_id INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  FLOAT			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+DISTKEY(subject_id);
+
+
+
+
+CREATE TABLE drug_era
+ (drug_era_id					INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+DISTKEY(person_id);
+
+
+CREATE TABLE dose_era
+ (dose_era_id					  INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						FLOAT			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+DISTKEY(person_id);
+
+
+
+
+CREATE TABLE condition_era
+ (condition_era_id				    INTEGER			NOT NULL ,
+   person_id INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+DISTKEY(person_id);
+
+
+
+
+
+
+

DDLGeneratr/output/sql server/OMOP CDM sql server ddl.txt

@@ -0,0 +1,735 @@
+/*********************************************************************************
+# Copyright 2017-11 Observational Health Data Sciences and Informatics
+#
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+********************************************************************************/
+
+/************************
+
+ ####### #     # ####### ######      #####  ######  #     #           #######      #####
+ #     # ##   ## #     # #     #    #     # #     # ##   ##    #    # #           #     #
+ #     # # # # # #     # #     #    #       #     # # # # #    #    # #                 #
+ #     # #  #  # #     # ######     #       #     # #  #  #    #    # ######       #####
+ #     # #     # #     # #          #       #     # #     #    #    #       # ###       #
+ #     # #     # #     # #          #     # #     # #     #     #  #  #     # ### #     #
+ ####### #     # ####### #           #####  ######  #     #      ##    #####  ###  #####
+
+
+sql server script to create OMOP common data model version 5.3
+
+last revised: 6-Nov-2017
+
+Authors:  Patrick Ryan, Christian Reich, Clair Blacketer
+
+
+*************************/
+
+
+/************************
+
+Standardized vocabulary
+
+************************/
+
+
+CREATE TABLE concept (
+  concept_id			    INTEGER			  NOT NULL ,
+  concept_name			  VARCHAR(255)	NOT NULL ,
+  domain_id				    VARCHAR(20)		NOT NULL ,
+  vocabulary_id			  VARCHAR(20)		NOT NULL ,
+  concept_class_id		VARCHAR(20)		NOT NULL ,
+  standard_concept		VARCHAR(1)		NULL ,
+  concept_code			  VARCHAR(50)		NOT NULL ,
+  valid_start_date		DATE			    NOT NULL ,
+  valid_end_date		  DATE			    NOT NULL ,
+  invalid_reason		  VARCHAR(1)		NULL
+)
+;
+
+
+CREATE TABLE vocabulary (
+  vocabulary_id			    VARCHAR(20)		NOT NULL,
+  vocabulary_name		    VARCHAR(255)	NOT NULL,
+  vocabulary_reference	VARCHAR(255)	NOT NULL,
+  vocabulary_version	  VARCHAR(255)	NOT NULL,
+  vocabulary_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE domain (
+  domain_id			    VARCHAR(20)		NOT NULL,
+  domain_name		    VARCHAR(255)	NOT NULL,
+  domain_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_class (
+  concept_class_id			    VARCHAR(20)		NOT NULL,
+  concept_class_name		    VARCHAR(255)	NOT NULL,
+  concept_class_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_relationship (
+  concept_id_1			INTEGER			NOT NULL,
+  concept_id_2			INTEGER			NOT NULL,
+  relationship_id		VARCHAR(20)	NOT NULL,
+  valid_start_date	DATE			  NOT NULL,
+  valid_end_date		DATE			  NOT NULL,
+  invalid_reason		VARCHAR(1)	NULL
+  )
+;
+
+
+CREATE TABLE relationship (
+  relationship_id			    VARCHAR(20)		NOT NULL,
+  relationship_name			  VARCHAR(255)	NOT NULL,
+  is_hierarchical			    VARCHAR(1)		NOT NULL,
+  defines_ancestry			  VARCHAR(1)		NOT NULL,
+  reverse_relationship_id	VARCHAR(20)		NOT NULL,
+  relationship_concept_id	INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_synonym (
+  concept_id			      INTEGER			  NOT NULL,
+  concept_synonym_name	VARCHAR(1000)	NOT NULL,
+  language_concept_id	  INTEGER			  NOT NULL
+)
+;
+
+
+CREATE TABLE concept_ancestor (
+  ancestor_concept_id		    INTEGER		NOT NULL,
+  descendant_concept_id		  INTEGER		NOT NULL,
+  min_levels_of_separation	INTEGER		NOT NULL,
+  max_levels_of_separation	INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE source_to_concept_map (
+  source_code				      VARCHAR(50)		NOT NULL,
+  source_concept_id			  INTEGER			  NOT NULL,
+  source_vocabulary_id		VARCHAR(20)		NOT NULL,
+  source_code_description	VARCHAR(255)	NULL,
+  target_concept_id			  INTEGER			  NOT NULL,
+  target_vocabulary_id		VARCHAR(20)		NOT NULL,
+  valid_start_date			  DATE			    NOT NULL,
+  valid_end_date			    DATE			    NOT NULL,
+  invalid_reason			    VARCHAR(1)		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_strength (
+  drug_concept_id				      INTEGER		  NOT NULL,
+  ingredient_concept_id			  INTEGER		  NOT NULL,
+  amount_value					      FLOAT		    NULL,
+  amount_unit_concept_id		  INTEGER		  NULL,
+  numerator_value				      FLOAT		    NULL,
+  numerator_unit_concept_id		INTEGER		  NULL,
+  denominator_value				    FLOAT		    NULL,
+  denominator_unit_concept_id	INTEGER		  NULL,
+  box_size						        INTEGER		  NULL,
+  valid_start_date				    DATE		    NOT NULL,
+  valid_end_date				      DATE		    NOT NULL,
+  invalid_reason				      VARCHAR(1)  NULL
+)
+;
+
+
+
+CREATE TABLE cohort_definition (
+  cohort_definition_id				    INTEGER			  NOT NULL,
+  cohort_definition_name			    VARCHAR(255)	NOT NULL,
+  cohort_definition_description		VARCHAR(MAX)	NULL,
+  definition_type_concept_id		  INTEGER			  NOT NULL,
+  cohort_definition_syntax			  VARCHAR(MAX)	NULL,
+  subject_concept_id				      INTEGER			  NOT NULL,
+  cohort_initiation_date			    DATE			    NULL
+)
+;
+
+
+CREATE TABLE attribute_definition (
+  attribute_definition_id		  INTEGER			  NOT NULL,
+  attribute_name				      VARCHAR(255)	NOT NULL,
+  attribute_description			  VARCHAR(MAX)	NULL,
+  attribute_type_concept_id		INTEGER			  NOT NULL,
+  attribute_syntax				    VARCHAR(MAX)	NULL
+)
+;
+
+
+/**************************
+
+Standardized meta-data
+
+***************************/
+
+
+CREATE TABLE cdm_source
+(
+  cdm_source_name					        VARCHAR(255)	NOT NULL ,
+  cdm_source_abbreviation			    VARCHAR(25)		NULL ,
+  cdm_holder							        VARCHAR(255)	NULL ,
+  source_description					    VARCHAR(MAX)	NULL ,
+  source_documentation_reference	VARCHAR(255)	NULL ,
+  cdm_etl_reference					      VARCHAR(255)	NULL ,
+  source_release_date				      DATE			    NULL ,
+  cdm_release_date					      DATE			    NULL ,
+  cdm_version						          VARCHAR(10)		NULL ,
+  vocabulary_version					    VARCHAR(20)		NULL
+)
+;
+
+
+CREATE TABLE metadata
+(
+  metadata_concept_id       INTEGER       NOT NULL ,
+  metadata_type_concept_id  INTEGER       NOT NULL ,
+  name                      VARCHAR(250)  NOT NULL ,
+  value_as_string           NVARCHAR      NULL ,
+  value_as_concept_id       INTEGER       NULL ,
+  metadata_date             DATE          NULL ,
+  metadata_datetime         DATETIME2     NULL
+)
+;
+
+
+/************************
+
+Standardized clinical data
+
+************************/
+
+
+CREATE TABLE person
+(
+  person_id						        INTEGER	  	NOT NULL ,
+  gender_concept_id				    INTEGER	  	NOT NULL ,
+  year_of_birth					      INTEGER	  	NOT NULL ,
+  month_of_birth				      INTEGER	  	NULL,
+  day_of_birth					      INTEGER	  	NULL,
+  birth_datetime				      DATETIME2	  NULL,
+  race_concept_id				      INTEGER		  NOT NULL,
+  ethnicity_concept_id			  INTEGER	  	NOT NULL,
+  location_id					        INTEGER		  NULL,
+  provider_id					        INTEGER		  NULL,
+  care_site_id					      INTEGER		  NULL,
+  person_source_value			    VARCHAR(50) NULL,
+  gender_source_value			    VARCHAR(50) NULL,
+  gender_source_concept_id	  INTEGER		  NULL,
+  race_source_value				    VARCHAR(50) NULL,
+  race_source_concept_id		  INTEGER		  NULL,
+  ethnicity_source_value		  VARCHAR(50) NULL,
+  ethnicity_source_concept_id	INTEGER		  NULL
+)
+;
+
+
+CREATE TABLE observation_period
+(
+  observation_period_id				      INTEGER		NOT NULL ,
+  person_id							            INTEGER		NOT NULL ,
+  observation_period_start_date		  DATE		  NOT NULL ,
+  observation_period_end_date		    DATE		  NOT NULL ,
+  period_type_concept_id			      INTEGER		NOT NULL
+)
+;
+
+
+CREATE TABLE specimen
+(
+  specimen_id						      INTEGER			NOT NULL ,
+  person_id							      INTEGER			NOT NULL ,
+  specimen_concept_id				  INTEGER			NOT NULL ,
+  specimen_type_concept_id		INTEGER			NOT NULL ,
+  specimen_date						    DATE			  NOT NULL ,
+  specimen_datetime					  DATETIME2		NULL ,
+  quantity							      FLOAT			  NULL ,
+  unit_concept_id					    INTEGER			NULL ,
+  anatomic_site_concept_id		INTEGER			NULL ,
+  disease_status_concept_id		INTEGER			NULL ,
+  specimen_source_id				  VARCHAR(50)	NULL ,
+  specimen_source_value				VARCHAR(50)	NULL ,
+  unit_source_value					  VARCHAR(50)	NULL ,
+  anatomic_site_source_value	VARCHAR(50)	NULL ,
+  disease_status_source_value VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE death
+(
+  person_id							  INTEGER			NOT NULL ,
+  death_date							DATE			  NOT NULL ,
+  death_datetime					DATETIME2		NULL ,
+  death_type_concept_id   INTEGER			NOT NULL ,
+  cause_concept_id			  INTEGER			NULL ,
+  cause_source_value			VARCHAR(50)	NULL,
+  cause_source_concept_id INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_occurrence
+(
+  visit_occurrence_id			      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  visit_concept_id				      INTEGER			NOT NULL ,
+  visit_start_date				      DATE			  NOT NULL ,
+  visit_start_datetime				  DATETIME2		NULL ,
+  visit_end_date					      DATE			  NOT NULL ,
+  visit_end_datetime					  DATETIME2		NULL ,
+  visit_type_concept_id			    INTEGER			NOT NULL ,
+  provider_id					          INTEGER			NULL,
+  care_site_id					        INTEGER			NULL,
+  visit_source_value				    VARCHAR(50)	NULL,
+  visit_source_concept_id		    INTEGER			NULL
+  admitting_source_concept_id	  INTEGER			NULL ,
+  admitting_source_value		    VARCHAR(50)	NULL ,
+  discharge_to_concept_id		    INTEGER(50)	NULL ,
+  discharge_to_source_value		  VARCHAR(50)	NULL ,
+  preceding_visit_occurrence_id	INTEGER			NULL
+)
+;
+
+
+CREATE TABLE visit_detail
+(
+  visit_detail_id             INTEGER     NOT NULL ,
+  person_id                   INTEGER     NOT NULL ,
+  visit_detail_concept_id     INTEGER     NOT NULL ,
+  visit_start_date            DATE        NOT NULL ,
+  visit_start_datetime        DATETIME2   NULL ,
+  visit_end_date              DATE        NOT NULL ,
+  visit_end_datetime          DATETIME2   NULL ,
+  visit_type_concept_id       INTEGER     NOT NULL ,
+  provider_id                 INTEGER     NULL ,
+  care_site_id                INTEGER     NULL ,
+  admitting_source_concept_id INTEGER     NULL ,
+  discharge_to_concept_id     INTEGER     NULL ,
+  preceding_visit_detail_id   INTEGER     NULL ,
+  visit_source_value          VARCHAR(50) NULL ,
+  visit_source_concept_id     INTEGER     NULL ,
+  admitting_source_value      VARCHAR(50) NULL ,
+  discharge_to_source_value   VARCHAR(50) NULL ,
+  visit_detail_parent_id      INTEGER     NULL ,
+  visit_occurrence_id         INTEGER     NOT NULL
+)
+;
+
+
+CREATE TABLE procedure_occurrence
+(
+  procedure_occurrence_id		  INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  procedure_concept_id			  INTEGER			NOT NULL ,
+  procedure_date				      DATE			  NOT NULL ,
+  procedure_datetime			    DATETIME2		NULL ,
+  procedure_type_concept_id		INTEGER			NOT NULL ,
+  modifier_concept_id			    INTEGER			NULL ,
+  quantity						        INTEGER			NULL ,
+  provider_id					        INTEGER			NULL ,
+  visit_occurrence_id			    INTEGER			NULL ,
+  visit_detail_id             INTEGER     NULL ,
+  procedure_source_value		  VARCHAR(50)	NULL ,
+  procedure_source_concept_id	INTEGER			NULL ,
+  modifier_source_value		   VARCHAR(50)	NULL
+)
+;
+
+
+CREATE TABLE drug_exposure
+(
+  drug_exposure_id				      INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  drug_concept_id				        INTEGER			  NOT NULL ,
+  drug_exposure_start_date		  DATE			    NOT NULL ,
+  drug_exposure_start_datetime  DATETIME2		  NULL ,
+  drug_exposure_end_date		    DATE			    NOT NULL ,
+  drug_exposure_end_datetime	  DATETIME2		  NULL ,
+  verbatim_end_date				      DATE			    NULL ,
+  drug_type_concept_id			    INTEGER			  NOT NULL ,
+  stop_reason					          VARCHAR(20)		NULL ,
+  refills						            INTEGER		  	NULL ,
+  quantity						          FLOAT			    NULL ,
+  days_supply					          INTEGER		  	NULL ,
+  sig							              VARCHAR(MAX)	NULL ,
+  route_concept_id				      INTEGER			  NULL ,
+  lot_number					          VARCHAR(50)	  NULL ,
+  provider_id					          INTEGER			  NULL ,
+  visit_occurrence_id			      INTEGER			  NULL ,
+  visit_detail_id               INTEGER       NULL ,
+  drug_source_value				      VARCHAR(50)	  NULL ,
+  drug_source_concept_id		    INTEGER			  NULL ,
+  route_source_value			      VARCHAR(50)	  NULL ,
+  dose_unit_source_value		    VARCHAR(50)	  NULL
+)
+;
+
+
+CREATE TABLE device_exposure
+(
+  device_exposure_id			        INTEGER		  	NOT NULL ,
+  person_id						            INTEGER			  NOT NULL ,
+  device_concept_id			        	INTEGER			  NOT NULL ,
+  device_exposure_start_date	    DATE			    NOT NULL ,
+  device_exposure_start_datetime  DATETIME2		  NULL ,
+  device_exposure_end_date		    DATE			    NULL ,
+  device_exposure_end_datetime    DATETIME2		  NULL ,
+  device_type_concept_id		      INTEGER			  NOT NULL ,
+  unique_device_id			        	VARCHAR(50)		NULL ,
+  quantity						            INTEGER			  NULL ,
+  provider_id					            INTEGER			  NULL ,
+  visit_occurrence_id			        INTEGER			  NULL ,
+  visit_detail_id                 INTEGER       NULL ,
+  device_source_value			        VARCHAR(100)	NULL ,
+  device_source_concept_id		    INTEGER			  NULL
+)
+;
+
+
+CREATE TABLE condition_occurrence
+(
+  condition_occurrence_id		    INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  condition_concept_id			    INTEGER			NOT NULL ,
+  condition_start_date			    DATE			  NOT NULL ,
+  condition_start_datetime		  DATETIME2		NULL ,
+  condition_end_date			      DATE			  NULL ,
+  condition_end_datetime		    DATETIME2		NULL ,
+  condition_type_concept_id		  INTEGER			NOT NULL ,
+  stop_reason					          VARCHAR(20)	NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  condition_source_value		    VARCHAR(50)	NULL ,
+  condition_source_concept_id	  INTEGER			NULL ,
+  condition_status_source_value	VARCHAR(50)	NULL ,
+  condition_status_concept_id	  INTEGER			NULL
+)
+;
+
+
+CREATE TABLE measurement
+(
+  measurement_id				        INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  measurement_concept_id		    INTEGER			NOT NULL ,
+  measurement_date				      DATE			  NOT NULL ,
+  measurement_time              VARCHAR(10) NULL ,
+  measurement_datetime			    DATETIME2		NULL ,
+  measurement_type_concept_id	  INTEGER			NOT NULL ,
+  operator_concept_id			      INTEGER			NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  range_low					          	FLOAT			  NULL ,
+  range_high					          FLOAT			  NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  measurement_source_value		  VARCHAR(50)	NULL ,
+  measurement_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  value_source_value			      VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE note
+(
+  note_id						    INTEGER			  NOT NULL ,
+  person_id						  INTEGER			  NOT NULL ,
+  note_date						  DATE			    NOT NULL ,
+  note_datetime					DATETIME2		  NULL ,
+  note_type_concept_id	INTEGER			  NOT NULL ,
+  note_class_concept_id INTEGER			  NOT NULL ,
+  note_title					  VARCHAR(250)	NULL ,
+  note_text						  VARCHAR(MAX)  NULL ,
+  encoding_concept_id		INTEGER			  NOT NULL ,
+  language_concept_id		INTEGER			  NOT NULL ,
+  provider_id					  INTEGER			  NULL ,
+  visit_occurrence_id		INTEGER			  NULL ,
+  visit_detail_id       INTEGER       NULL ,
+  note_source_value			VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE note_nlp
+(
+  note_nlp_id					        BIGINT			  NOT NULL ,
+  note_id						          INTEGER			  NOT NULL ,
+  section_concept_id			    INTEGER			  NULL ,
+  snippet						          VARCHAR(250)	NULL ,
+  offset						          VARCHAR(250)	NULL ,
+  lexical_variant				      VARCHAR(250)	NOT NULL ,
+  note_nlp_concept_id			    INTEGER			  NULL ,
+  note_nlp_source_concept_id  INTEGER			  NULL ,
+  nlp_system					        VARCHAR(250)	NULL ,
+  nlp_date						        DATE			    NOT NULL ,
+  nlp_datetime					      DATETIME2		  NULL ,
+  term_exists					        VARCHAR(1)		NULL ,
+  term_temporal					      VARCHAR(50)		NULL ,
+  term_modifiers				      VARCHAR(2000)	NULL
+)
+;
+
+
+
+CREATE TABLE observation
+(
+  observation_id					      INTEGER			NOT NULL ,
+  person_id						          INTEGER			NOT NULL ,
+  observation_concept_id			  INTEGER			NOT NULL ,
+  observation_date				      DATE			  NOT NULL ,
+  observation_datetime				  DATETIME2		NULL ,
+  observation_type_concept_id	  INTEGER			NOT NULL ,
+  value_as_number				        FLOAT			  NULL ,
+  value_as_string				        VARCHAR(60)	NULL ,
+  value_as_concept_id			      INTEGER			NULL ,
+  qualifier_concept_id			    INTEGER			NULL ,
+  unit_concept_id				        INTEGER			NULL ,
+  provider_id					          INTEGER			NULL ,
+  visit_occurrence_id			      INTEGER			NULL ,
+  visit_detail_id               INTEGER     NULL ,
+  observation_source_value		  VARCHAR(50)	NULL ,
+  observation_source_concept_id	INTEGER			NULL ,
+  unit_source_value				      VARCHAR(50)	NULL ,
+  qualifier_source_value			  VARCHAR(50)	NULL
+)
+;
+
+
+
+CREATE TABLE fact_relationship
+(
+  domain_concept_id_1			INTEGER			NOT NULL ,
+  fact_id_1						    INTEGER			NOT NULL ,
+  domain_concept_id_2			INTEGER			NOT NULL ,
+  fact_id_2						    INTEGER			NOT NULL ,
+  relationship_concept_id	INTEGER			NOT NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health system data
+
+************************/
+
+
+
+CREATE TABLE location
+(
+  location_id					  INTEGER			  NOT NULL ,
+  address_1						  VARCHAR(50)		NULL ,
+  address_2						  VARCHAR(50)		NULL ,
+  city							    VARCHAR(50)		NULL ,
+  state							    VARCHAR(2)		NULL ,
+  zip							      VARCHAR(9)		NULL ,
+  county							  VARCHAR(20)		NULL ,
+  location_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE care_site
+(
+  care_site_id						      INTEGER			  NOT NULL ,
+  care_site_name						    VARCHAR(255)  NULL ,
+  place_of_service_concept_id	  INTEGER			  NULL ,
+  location_id						        INTEGER			  NULL ,
+  care_site_source_value			  VARCHAR(50)		NULL ,
+  place_of_service_source_value VARCHAR(50)		NULL
+)
+;
+
+
+
+CREATE TABLE provider
+(
+  provider_id					        INTEGER			  NOT NULL ,
+  provider_name					      VARCHAR(255)	NULL ,
+  NPI							            VARCHAR(20)		NULL ,
+  DEA							            VARCHAR(20)		NULL ,
+  specialty_concept_id			  INTEGER			  NULL ,
+  care_site_id					      INTEGER			  NULL ,
+  year_of_birth					      INTEGER			  NULL ,
+  gender_concept_id				    INTEGER			  NULL ,
+  provider_source_value			  VARCHAR(50)		NULL ,
+  specialty_source_value			VARCHAR(50)		NULL ,
+  specialty_source_concept_id	INTEGER			  NULL ,
+  gender_source_value			    VARCHAR(50)		NULL ,
+  gender_source_concept_id		INTEGER			  NULL
+)
+;
+
+
+
+
+/************************
+
+Standardized health economics
+
+************************/
+
+
+CREATE TABLE payer_plan_period
+(
+  payer_plan_period_id			    INTEGER			  NOT NULL ,
+  person_id						          INTEGER			  NOT NULL ,
+  payer_plan_period_start_date  DATE			    NOT NULL ,
+  payer_plan_period_end_date		DATE			    NOT NULL ,
+  payer_concept_id              INTEGER       NULL ,
+  payer_source_value				    VARCHAR(50)	  NULL ,
+  payer_source_concept_id       INTEGER       NULL ,
+  plan_concept_id               INTEGER       NULL ,
+  plan_source_value				      VARCHAR(50)	  NULL ,
+  plan_source_concept_id        INTEGER       NULL ,
+  sponsor_concept_id            INTEGER       NULL ,
+  sponsor_source_value          VARCHAR(50)   NULL ,
+  sponsor_source_concept_id     INTEGER       NULL ,
+  family_source_value			      VARCHAR(50)	  NULL ,
+  stop_reason_concept_id        INTEGER       NULL ,
+  stop_reason_source_value      INTEGER       NULL ,
+  stop_reason_source_concept_id INTEGER       NULL
+)
+;
+
+
+CREATE TABLE cost
+(
+  cost_id					          INTEGER	    NOT NULL ,
+  cost_event_id             INTEGER     NOT NULL ,
+  cost_domain_id            VARCHAR(20) NOT NULL ,
+  cost_type_concept_id      INTEGER     NOT NULL ,
+  currency_concept_id			  INTEGER			NULL ,
+  total_charge						  FLOAT			  NULL ,
+  total_cost						    FLOAT			  NULL ,
+  total_paid						    FLOAT			  NULL ,
+  paid_by_payer					    FLOAT			  NULL ,
+  paid_by_patient						FLOAT			  NULL ,
+  paid_patient_copay				FLOAT			  NULL ,
+  paid_patient_coinsurance  FLOAT			  NULL ,
+  paid_patient_deductible		FLOAT			  NULL ,
+  paid_by_primary						FLOAT			  NULL ,
+  paid_ingredient_cost			FLOAT			  NULL ,
+  paid_dispensing_fee				FLOAT			  NULL ,
+  payer_plan_period_id			INTEGER			NULL ,
+  amount_allowed		        FLOAT			  NULL ,
+  revenue_code_concept_id		INTEGER			NULL ,
+  reveue_code_source_value  VARCHAR(50) NULL,
+  drg_concept_id			      INTEGER		  NULL,
+  drg_source_value			    VARCHAR(3)	NULL
+)
+;
+
+
+
+
+
+/************************
+
+Standardized derived elements
+
+************************/
+
+CREATE TABLE cohort
+(
+  cohort_definition_id	INTEGER		NOT NULL ,
+  subject_id						INTEGER		NOT NULL ,
+  cohort_start_date			DATE			NOT NULL ,
+  cohort_end_date				DATE			NOT NULL
+)
+;
+
+
+CREATE TABLE cohort_attribute
+(
+  cohort_definition_id		INTEGER		NOT NULL ,
+  cohort_start_date				DATE			NOT NULL ,
+  cohort_end_date				  DATE			NOT NULL ,
+  subject_id						  INTEGER		NOT NULL ,
+  attribute_definition_id INTEGER		NOT NULL ,
+  value_as_number				  FLOAT			NULL ,
+  value_as_concept_id			INTEGER		NULL
+)
+;
+
+
+
+
+CREATE TABLE drug_era
+(
+  drug_era_id					INTEGER			NOT NULL ,
+  person_id						INTEGER			NOT NULL ,
+  drug_concept_id			INTEGER			NOT NULL ,
+  drug_era_start_date	DATE			  NOT NULL ,
+  drug_era_end_date		DATE			  NOT NULL ,
+  drug_exposure_count	INTEGER			NULL ,
+  gap_days						INTEGER			NULL
+)
+;
+
+
+CREATE TABLE dose_era
+(
+  dose_era_id					  INTEGER			NOT NULL ,
+  person_id						  INTEGER			NOT NULL ,
+  drug_concept_id				INTEGER			NOT NULL ,
+  unit_concept_id				INTEGER			NOT NULL ,
+  dose_value						FLOAT			  NOT NULL ,
+  dose_era_start_date		DATE			  NOT NULL ,
+  dose_era_end_date	    DATE			  NOT NULL
+)
+;
+
+
+
+
+CREATE TABLE condition_era
+(
+  condition_era_id				    INTEGER			NOT NULL ,
+  person_id						        INTEGER			NOT NULL ,
+  condition_concept_id			  INTEGER			NOT NULL ,
+  condition_era_start_date		DATE			  NOT NULL ,
+  condition_era_end_date			DATE			  NOT NULL ,
+  condition_occurrence_count	INTEGER			NULL
+)
+;
+
+
+
+
+
+
+

DDLGeneratr/reports/OMOP_CDM_PDF.Rmd

@@ -0,0 +1,207 @@
+---
+title: "OMOP Common Data Model Specifications"
+author: "Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan and Clair Blacketer"
+date: "`r Sys.Date()`"
+output:
+  pdf_document:
+    number_sections: yes
+    toc: yes
+linkcolor: blue
+---
+
+# License
+
+```{r child = '../CommonDataModel_Wiki_Files/License.md'}
+```
+
+# Background
+```{r child = '../CommonDataModel_Wiki_Files/Background/Background.md'}
+```
+
+## The Role of the Common Data Model
+```{r child = '../CommonDataModel_Wiki_Files/Background/The-Role-of-the-Common-Data-Model.md'}
+```
+
+## Design Principles
+```{r child = '../CommonDataModel_Wiki_Files/Background/Design-Principles.md'}
+```
+
+## Data Model Conventions
+```{r child = '../CommonDataModel_Wiki_Files/Background/Data-Model-Conventions.md'}
+```
+
+# Glossary of Terms
+```{r child = '../CommonDataModel_Wiki_Files/Glossary-of-Terms.md'}
+```
+
+# Standardized Vocabularies
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/Standardized-Vocabularies.md'}
+```
+
+## CONCEPT
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT.md'}
+```
+
+## VOCABULARY
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/VOCABULARY.md'}
+```
+
+## DOMAIN
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/DOMAIN.md'}
+```
+
+## CONCEPT_CLASS
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_CLASS.md'}
+```
+
+## CONCEPT_RELATIONSHIP
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md'}
+```
+
+## RELATIONSHIP
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/RELATIONSHIP.md'}
+```
+
+## CONCEPT_SYNONYM
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_SYNONYM.md'}
+```
+
+## CONCEPT_ANCESTOR
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_ANCESTOR.md'}
+```
+
+## SOURCE_TO_CONCEPT_MAP
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md'}
+```
+
+## DRUG_STRENGTH
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/DRUG_STRENGTH.md'}
+```
+
+## COHORT_DEFINITION
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/COHORT_DEFINITION.md'}
+```
+
+## ATTRIBUTE_DEFINITION
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md'}
+```
+
+# Standardized Metadata
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedMetadata/Standardized-Metadata.md'}
+```
+
+## CDM_SOURCE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedMetadata/CDM_SOURCE.md'}
+```
+
+# Standardized Clinical Data Tables
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md'}
+```
+
+## PERSON
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PERSON.md'}
+```
+
+## OBSERVATION_PERIOD
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md'}
+```
+
+## SPECIMEN
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/SPECIMEN.md'}
+```
+
+## DEATH
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEATH.md'}
+```
+
+## VISIT_OCCURRENCE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md'}
+```
+
+## PROCEDURE_OCCURRENCE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md'}
+```
+
+## DRUG_EXPOSURE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DRUG_EXPOSURE.md'}
+```
+
+## DEVICE_EXPOSURE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md'}
+```
+
+## CONDITION_OCCURRENCE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md'}
+```
+
+## MEASUREMENT
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/MEASUREMENT.md'}
+```
+
+## NOTE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE.md'}
+```
+
+## NOTE_NLP
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE_NLP.md'}
+```
+
+## OBSERVATION
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION.md'}
+```
+
+## FACT_RELATIONSHIP
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md'}
+```
+
+# Standardized Health System Data Tables
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md'}
+```
+
+## LOCATION
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/LOCATION.md'}
+```
+
+## CARE_SITE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/CARE_SITE.md'}
+```
+
+## PROVIDER
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/PROVIDER.md'}
+```
+
+# Standardized Health Economics Data Tables
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md'}
+```
+
+## PAYER_PLAN_PERIOD
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md'}
+```
+
+## COST
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/COST.md'}
+```
+
+# Standardized Derived Elements
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/Standardized-Derived-Elements.md'}
+```
+
+## COHORT
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT.md'}
+```
+
+## COHORT_ATTRIBUTE
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT_ATTRIBUTE.md'}
+```
+
+## DRUG_ERA
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/DRUG_ERA.md'}
+```
+
+## DOSE_ERA
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/DOSE_ERA.md'}
+```
+
+## CONDITION_ERA
+```{r child = '../CommonDataModel_Wiki_Files/StandardizedDerivedElements/CONDITION_ERA.md'}
+```

DDLGeneratr/reports/OMOP_CDM_PDF_rendered.Rmd

@@ -0,0 +1,207 @@
+---
+title: "OMOP Common Data Model Specifications"
+author: "Christian Reich, Patrick Ryan, Rimma Belenkaya, Karthik Natarajan and Clair Blacketer"
+date: "`r Sys.Date()`"
+output:
+  pdf_document:
+    number_sections: yes
+    toc: yes
+linkcolor: blue
+---
+
+# License
+
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/License.md'}
+```
+
+# Background
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Background.md'}
+```
+
+## The Role of the Common Data Model
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/The-Role-of-the-Common-Data-Model.md'}
+```
+
+## Design Principles
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Design-Principles.md'}
+```
+
+## Data Model Conventions
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Background/Data-Model-Conventions.md'}
+```
+
+# Glossary of Terms
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/Glossary-of-Terms.md'}
+```
+
+# Standardized Vocabularies
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/Standardized-Vocabularies.md'}
+```
+
+## CONCEPT
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT.md'}
+```
+
+## VOCABULARY
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/VOCABULARY.md'}
+```
+
+## DOMAIN
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/DOMAIN.md'}
+```
+
+## CONCEPT_CLASS
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_CLASS.md'}
+```
+
+## CONCEPT_RELATIONSHIP
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_RELATIONSHIP.md'}
+```
+
+## RELATIONSHIP
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/RELATIONSHIP.md'}
+```
+
+## CONCEPT_SYNONYM
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_SYNONYM.md'}
+```
+
+## CONCEPT_ANCESTOR
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/CONCEPT_ANCESTOR.md'}
+```
+
+## SOURCE_TO_CONCEPT_MAP
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/SOURCE_TO_CONCEPT_MAP.md'}
+```
+
+## DRUG_STRENGTH
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/DRUG_STRENGTH.md'}
+```
+
+## COHORT_DEFINITION
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/COHORT_DEFINITION.md'}
+```
+
+## ATTRIBUTE_DEFINITION
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedVocabularies/ATTRIBUTE_DEFINITION.md'}
+```
+
+# Standardized Metadata
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedMetadata/Standardized-Metadata.md'}
+```
+
+## CDM_SOURCE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedMetadata/CDM_SOURCE.md'}
+```
+
+# Standardized Clinical Data Tables
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/Standardized-clinical-Data-Tables.md'}
+```
+
+## PERSON
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PERSON.md'}
+```
+
+## OBSERVATION_PERIOD
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION_PERIOD.md'}
+```
+
+## SPECIMEN
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/SPECIMEN.md'}
+```
+
+## DEATH
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEATH.md'}
+```
+
+## VISIT_OCCURRENCE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/VISIT_OCCURRENCE.md'}
+```
+
+## PROCEDURE_OCCURRENCE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/PROCEDURE_OCCURRENCE.md'}
+```
+
+## DRUG_EXPOSURE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DRUG_EXPOSURE.md'}
+```
+
+## DEVICE_EXPOSURE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/DEVICE_EXPOSURE.md'}
+```
+
+## CONDITION_OCCURRENCE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/CONDITION_OCCURRENCE.md'}
+```
+
+## MEASUREMENT
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/MEASUREMENT.md'}
+```
+
+## NOTE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE.md'}
+```
+
+## NOTE_NLP
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/NOTE_NLP.md'}
+```
+
+## OBSERVATION
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/OBSERVATION.md'}
+```
+
+## FACT_RELATIONSHIP
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedclinicalDataTables/FACT_RELATIONSHIP.md'}
+```
+
+# Standardized Health System Data Tables
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/Standardized-Health-System-Data-Tables.md'}
+```
+
+## LOCATION
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/LOCATION.md'}
+```
+
+## CARE_SITE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/CARE_SITE.md'}
+```
+
+## PROVIDER
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthSystemDataTables/PROVIDER.md'}
+```
+
+# Standardized Health Economics Data Tables
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/Standardized-Health-Economics-Data-Tables.md'}
+```
+
+## PAYER_PLAN_PERIOD
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/PAYER_PLAN_PERIOD.md'}
+```
+
+## COST
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedHealthEconomicsDataTables/COST.md'}
+```
+
+# Standardized Derived Elements
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/Standardized-Derived-Elements.md'}
+```
+
+## COHORT
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT.md'}
+```
+
+## COHORT_ATTRIBUTE
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/COHORT_ATTRIBUTE.md'}
+```
+
+## DRUG_ERA
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/DRUG_ERA.md'}
+```
+
+## DOSE_ERA
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/DOSE_ERA.md'}
+```
+
+## CONDITION_ERA
+```{r child = '../../Documentation/CommonDataModel_Wiki_Files/StandardizedDerivedElements/CONDITION_ERA.md'}
+```

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/CONDITION_OCCURRENCE.md

@@ -20,7 +20,7 @@ Field|Required|Type|Description
 | condition_source_value         | No        | varchar(50)  | The source code for the condition as it appears in the source data. This code is mapped to a standard condition concept in the Standardized Vocabularies and the original code is stored here for reference.     |
 | condition_source_concept_id    | No        | integer      | A foreign key to a Condition Concept that refers to the code used in the source.                                                                                                                                 |
 | condition_status_source_value  | No        | varchar(50)  | The source code for the condition status as it appears in the source data.    |
-| condition_status_concept_id    | No        | integer      | A foreign key to the predefined concept in the standard vocabulary reflecting the condition status |                                                                                                                               |
+| condition_status_concept_id    | No        | integer      | A foreign key to the predefined Concept in the Standard Vocabulary reflecting the condition status |                                                                                                                               |
 
 ### Conventions 
 
@@ -37,5 +37,5 @@ Field|Required|Type|Description
   * Condition source codes are typically ICD-9-CM, Read or ICD-10 diagnosis codes from medical claims or discharge status/visit diagnosis codes from EHRs.
   * Presently, there is no designated vocabulary, domain, or class that represents condition status. The following concepts from SNOMED are recommended:
     * Admitting diagnosis: 4203942
-    * Final diagnosis: 4230359 <EFBFBD> should also be used for <20>Discharge diagnosis<69>
+    * Final diagnosis: 4230359 (should also be used for discharge diagnosis)
     * Preliminary diagnosis: 4033240

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/DEVICE_EXPOSURE.md

@@ -13,10 +13,10 @@ Field|Required|Type|Description
 |unique_device_id |No|varchar(50)|A UDI or equivalent identifying the instance of the Device used in the Person.|
 |quantity|No|integer|The number of individual Devices used for the exposure.|
 |provider_id|No|integer|A foreign key to the provider in the PROVIDER table who initiated of administered the Device.|
-|visit_occurrence_id|No|integer|A foreign key to the visit in the VISIT table during which the device was used.|
+|visit_occurrence_id|No|integer|A foreign key to the visit in the VISIT_OCCURRENCE table during which the device was used.|
+|visit_detail_id|No|integer|A foreign key to the visit detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.|
 |device_source_value|No|varchar(50)|The source code for the Device as it appears in the source data. This code is mapped to a standard Device Concept in the Standardized Vocabularies and the original code is stored here for reference.|
 |device_source_ concept_id|No|integer|A foreign key to a Device Concept that refers to the code used in the source.|
-|visit_detail_id|No|integer|A foreign key to the visit in the visit-detail table during which the Drug Exposure was initiated.|
 
 ### Conventions 
 
@@ -25,4 +25,5 @@ Field|Required|Type|Description
   * Valid Device Concepts belong to the "Device" domain.  The Concepts of this domain are derived from the DI portion of a UDI or based on other source vocabularies, like HCPCS.
   * A Device Type is assigned to each Device Exposure to track from what source the information was drawn or inferred. The valid domain_id for these Concepts is "Device Type".
   * The Visit during which the Device was first used is recorded through a reference to the VISIT_OCCURRENCE table. This information is not always available.
+  * The Visit Detail during which the Device was first used is recorded through a reference to the VISIT_DETAIL table. This information is not always available.
   * The Provider exposing the patient to the Device is recorded through a reference to the PROVIDER table. This information is not always available.

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/DRUG_EXPOSURE.md

@@ -22,16 +22,16 @@ Field|Required|Type|Description
 |refills|No|integer|The number of refills after the initial prescription. The initial prescription is not counted, values start with 0.|
 |quantity |No|float|The quantity of drug as recorded in the original prescription or dispensing record.|
 |days_supply|No|integer|The number of days of supply of the medication as recorded in the original prescription or dispensing record.|
-|sig|No|clob|The directions ("signetur") on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record.|
+|sig|No|varchar(MAX)|The directions ("signetur") on the Drug prescription as recorded in the original prescription (and printed on the container) or dispensing record.|
 |route_concept_id|No|integer|A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration.|
 |lot_number|No|varchar(50)|An identifier assigned to a particular quantity or lot of Drug product from the manufacturer.|
-|provider_id|No|integer|A foreign key to the provider in the provider table who initiated (prescribed or administered) the Drug Exposure.|
+|provider_id|No|integer|A foreign key to the provider in the PROVIDER table who initiated (prescribed or administered) the Drug Exposure.|
-|visit_occurrence_id|No|integer|A foreign key to the visit in the visit table during which the Drug Exposure was initiated.|
+|visit_occurrence_id|No|integer|A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Drug Exposure was initiated.|
+|visit_detail_id|No|integer|A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Drug Exposure was initiated.|
 |drug_source_value|No|varchar(50)|The source code for the Drug as it appears in the source data. This code is mapped to a Standard Drug concept in the Standardized Vocabularies and the original code is, stored here for reference.|
 |drug_source_concept_id|No|integer|A foreign key to a Drug Concept that refers to the code used in the source.|
 |route_source_value|No|varchar(50)|The information about the route of administration as detailed in the source.|
 |dose_unit_source_value|No|varchar(50)|The information about the dose unit as detailed in the source.|
-|visit_detail_id|No|integer|A foreign key to the visit in the VISIT_DETAIL table during which the Drug Exposure was initiated.|
 
 ### Conventions 
 

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/MEASUREMENT.md

@@ -16,7 +16,7 @@ Field|Required|Type|Description
 |range_high|No|float|The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value.|
 |provider_id|No|integer|A foreign key to the provider in the PROVIDER table who was responsible for initiating or obtaining the measurement.|
 |visit_occurrence_id|No|integer|A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Measurement was recorded.|
-|visit_detail_id|No|integer|A foreign key to the Visit in the VISIT_DETAIL table during which the Measurement was recorded. |
+|visit_detail_id|No|integer|A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Measurement was recorded. |
 |measurement_source_value|No|varchar(50)|The Measurement name as it appears in the source data. This code is mapped to a Standard Concept in the Standardized Vocabularies and the original code is stored here for reference.|
 |measurement_source_concept_id|No|integer|A foreign key to a Concept in the Standard Vocabularies that refers to the code used in the source.|
 |unit_source_value|No|varchar(50)|The source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is stored here for reference.|

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md

@@ -13,12 +13,12 @@ Field|Required|Type|Description
 |procedure_type_concept_id|Yes|integer|A foreign key to the predefined Concept identifier in the Standardized Vocabularies reflecting the type of source data from which the procedure record is derived.|
 |modifier_concept_id|No|integer|A foreign key to a Standard Concept identifier for a modifier to the Procedure (e.g. bilateral)|
 |quantity|No|integer|The quantity of procedures ordered or administered.|
-|provider_id|No|integer|A foreign key to the provider in the provider table who was responsible for carrying out the procedure.|
+|provider_id|No|integer|A foreign key to the provider in the PROVIDER table who was responsible for carrying out the procedure.|
-|visit_occurrence_id|No|integer|A foreign key to the visit in the visit table during which the Procedure was carried out.|
+|visit_occurrence_id|No|integer|A foreign key to the Visit in the VISIT_OCCURRENCE table during which the Procedure was carried out.|
+|visit_detail_id|No|integer|A foreign key to the Visit Detail in the VISIT_DETAIL table during which the Procedure was carried out.|
 |procedure_source_value|No|varchar(50)|The source code for the Procedure as it appears in the source data. This code is mapped to a standard procedure Concept in the Standardized Vocabularies and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4, HCPCS or OPCS-4 codes.|
 |procedure_source_concept_id|No|integer|A foreign key to a Procedure Concept that refers to the code used in the source.|
-|qualifier_source_value|No|varchar(50)|The source code for the qualifier as it appears in the source data.|
+|modifier_source_value|No|varchar(50)|The source code for the qualifier as it appears in the source data.|
-|visit_detail_id|No|integer|A foreign key to the visit in the visit table during which the Procedure was carried out.|
 
 ### Conventions 
 
@@ -28,4 +28,5 @@ Field|Required|Type|Description
   * If the quantity value is omitted, a single procedure is assumed.
   * The Procedure Type defines from where the Procedure Occurrence is drawn or inferred. For administrative claims records the type indicates whether a Procedure was primary or secondary and their relative positioning within a claim. 
   * The Visit during which the procedure was performed is recorded through a reference to the VISIT_OCCURRENCE table. This information is not always available.
+  * The Visit Detail during with the procedure was performed is recorded through a reference to the VISIT_DETAIL table. This information is not always available.
   * The Provider carrying out the procedure is recorded through a reference to the PROVIDER table. This information is not always available.

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/VISIT_DETAIL.md

@@ -25,22 +25,24 @@ Field|Required|Type|Description
 
 ### Conventions 
 
-  * All conventions used in Visit occurrence apply to visit detail, some notable exceptions:
+  * All conventions used in VISIT_OCCURRENCE apply to VISIT_DETAIL, some notable exceptions:
-  * A Visit Detail is an optional detail record for each visit-occurrence to a healthcare facility. For every record in visit_detail there has to be a parent visit_occurrence record.
+  * A Visit Detail is an optional detail record for each Visit Occurrence to a healthcare facility. For every record in VISIT_DETAIL there has to be a parent VISIT_OCCURRENCE record.
-  * One record in visit_detail can only have one visit_occurrence parent.
+  * One record in VISIT_DETAIL can only have one VISIT_OCCURRENCE parent.
-  * A single visit_occurrence record may have many child visit_detail records.
+  * A single VISIT_OCCURRENCE record may have many child VISIT_DETAIL records.
-  * Valid Visit Concepts belong to the "Visit" domain. Standard Visit Concepts are yet to be defined, but will represent a detail of the standard visit concept in visit-occurrence.
+  * Valid Visit Concepts belong to the "Visit" domain. Standard Visit Concepts are yet to be defined, but will represent a detail of the Standard Visit Concept in VISIT_OCCURRENCE.
-  * Handling of death: Is same as visit_occurrence
+  * Handling of death: In the case when a patient died during admission (VISIT_OCCURRENCE.DISCHARGE_DISPOSITION_CONCEPT_ID = 4216643 'Patient died'), a record in the Death table should be created with DEATH_TYPE_CONCEPT_ID = 44818516 (EHR discharge status "Expired").
-  * Source Concepts from place of service vocabularies are mapped into these standard visit Concepts in the Standardized Vocabularies. 
+  * Source Concepts from place of service vocabularies are mapped into these Standard Visit Concepts in the Standardized Vocabularies. 
-  * At any one day, there could be more than one visit. Visit_occurrence allows for more than one visit within single day. Visit_detail is to be used to only capture details within the visit_occurrence.
+  * At any one day, there could be more than one visit. VISIT_OCCURRENCE allows for more than one visit within a single day. VISIT_DETAIL is to be used to only capture details within the visit.
-  * One visit may involve multiple providers, in which case, in visit_occurrence, the ETL must specify how a single provider id is selected or leave the provider_id field null. Visit_detail allows for ETL to speicify multiple child records per visit_occurrence - and each of these child may represent different provider_ids.
+  * One visit may involve multiple providers, in which case, in VISIT_OCCURRENCE, the ETL must specify how a single provider id is selected or leave the provider_id field null. VISIT_DETAIL allows for ETL to speicify multiple child records per visit occurrence - and each of these child records may represent different provider_ids.
-  * One visit may involve multiple Care Sites, in which case, in visit_occurrence, the ETL must specify how a single care_site id is selected or leave the care_site_id field null. Visit_detail allows for ETL to speicify multiple child records per visit_occurrence - and each of these child may represent different care_sites.
+  * One visit may involve multiple Care Sites, in which case, in VISIT_OCCURRENCE, the ETL must specify how a single care_site id is selected or leave the care_site_id field null. VISIT_DETAIL allows for ETL to speicify multiple child records per visit occurrence - and each of these child records may represent different care_sites.
-  * Just like in visit_occurrence, records in visit_detail may be sequentially related to each. These sequential relations are represented using preceding_visit_detail_id
+  * Just like in VISIT_OCCURRENCE, records in VISIT_DETAIL may be sequentially related to each. These sequential relations are represented using preceding_visit_detail_id
-  * Unlike visit_occurrence, visit_detail may have nested visits with hierarchial relationships to each other. 
+  * Unlike VISIT_OCCURRENCE, VISIT_DETAIL may have nested visits with hierarchial relationships to each other. 
-  * Representation of US claim data: US claims data generally has two-levels. Header/summary data that summarizes the entire claim; Line/detail that details a claim. Detail is thus a child of the summary, and for every record in summary there is one or more records in detail. i.e. there will be atleast one FK link from visit_detail to visit_occurrence.
+  * Representation of US claim data: US claims data generally has two-levels. Header/summary data that summarizes the entire claim; Line/detail that details a claim. Detail is thus a child of the summary, and for every record in summary there is one or more records in detail. i.e. there will be atleast one FK link from VISIT_DETAIL to VISIT_OCCURRENCE.
  
- Example: an entire inpatient stay maybe one record in visit_occurrence table. This may have one or more detail information such as ER, ICU, medical floor, rehabilitation floor etc. Each of these visit_details may have different start/end date-times, different concept_id's and fact_id's - that would be separate record in visit_detail with a FK link to visit_occurrence. Each record within visit_detail maybe related to each other, sequentially –> ER leading to ICU leading to medical floor, leading to rehabilitation, or in hierarchical parent-child visit –> a visit for dialysis while in ICU.
+ Example: an entire inpatient stay maybe one record in the VISIT_OCCURRENCE table. This may have one or more detail records such as ER, ICU, medical floor, rehabilitation floor etc. Each of these visit details may have different start/end date-times, different concept_ids and fact_ids. These would become separate records in VISIT_DETAIL with a FK link to VISIT_OCCURRENCE. 
  
-Note the concept-id for visits is 9, and is shared between visit_occurrence and visit_detail in OMOP CDM. The key deviation from visit_occurrence is
+ Each record within VISIT_DETAIL may be related to each other, sequentially –> ER leading to ICU leading to medical floor, leading to rehabilitation, or in hierarchical parent-child visit –> a visit for dialysis while in ICU.
+
+Note the CONCEPT_ID for visits is 8, and is shared between VISIT_OCCURRENCE and VISIT_DETAIL in OMOP CDM. The key deviation from VISIT_OCCURRENCE is
 - self-referencing key: a new foreign key visit_detail_parent_id allows self referencing for nested visits.
-- visit_detail points to its parent record in visit_occurrence table (visit_occurrence_id)
+- VISIT_DETAIL points to its parent record in the VISIT_OCCURRENCE table (visit_occurrence_id)

Documentation/CommonDataModel_Wiki_Files/StandardizedClinicalDataTables/VISIT_OCCURRENCE.md

@@ -25,7 +25,7 @@ Field|Required|Type|Description
   * A Visit Occurrence is recorded for each visit to a healthcare facility. 
   * Valid Visit Concepts belong to the "Visit" domain. 
   * Standard Visit Concepts are defined as Inpatient Visit, Outpatient Visit, Emergency Room Visit, Long Term Care Visit and combined ER and Inpatient Visit. The latter is necessary because it is close to impossible to separate the two in many EHR system, treating them interchangeably. To annotate this correctly, the visit concept "Emergency Room and Inpatient Visit" (concept_id=262) should be used.
-  * Handling of death: In case when patient died during admission (Visit_Occurrence. discharge_disposition_concept_id = 4216643 'Patient died'), a record in the Death table should be created with death_type_concept_id = 44818516 (EHR discharge status "Expired").
+  * Handling of death: In the case when a patient died during admission (Visit_Occurrence. discharge_disposition_concept_id = 4216643 'Patient died'), a record in the Death table should be created with death_type_concept_id = 44818516 (EHR discharge status "Expired").
   * Source Concepts from place of service vocabularies are mapped into these standard visit Concepts in the Standardized Vocabularies. 
   * At any one day, there could be more than one visit.
   * One visit may involve multiple providers, in which case the ETL must specify how a single provider id is selected or leave the provider_id field null.