diff --git a/.github/workflows/R_CMD_check.yaml b/.github/workflows/R_CMD_check.yaml new file mode 100644 index 0000000..e1985ec --- /dev/null +++ b/.github/workflows/R_CMD_check.yaml @@ -0,0 +1,117 @@ +# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. +# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions +on: + push: + branches: + - '**' + pull_request: + branches: + - '**' + +name: R-CMD-check + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + max-parallel: 1 + fail-fast: true + matrix: + config: + #- {os: windows-latest, r: 'release'} # Does not appear to have Java 32-bit, hence the --no-multiarch + - {os: macOS-latest, r: 'release'} + #- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + #- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + + env: + R_REMOTES_NO_ERRORS_FROM_WARNINGS: true + RSPM: ${{ matrix.config.rspm }} + CDMDDLBASE_POSTGRESQL_USER: ${{ secrets.CDMDDLBASE_POSTGRESQL_USER }} + CDMDDLBASE_POSTGRESQL_PASSWORD: ${{ secrets.CDMDDLBASE_POSTGRESQL_PASSWORD }} + CDMDDLBASE_POSTGRESQL_SERVER: ${{ secrets.CDMDDLBASE_POSTGRESQL_SERVER }} + CDMDDLBASE_POSTGRESQL_SCHEMA: ${{ secrets.CDMDDLBASE_POSTGRESQL_CDM_SCHEMA }} + + steps: + - uses: actions/checkout@v2 + + - uses: r-lib/actions/setup-r@v1 + with: + r-version: ${{ matrix.config.r }} + + - uses: r-lib/actions/setup-tinytex@v1 + + - uses: r-lib/actions/setup-pandoc@v1 + + - name: Query dependencies + run: | + install.packages('remotes') + saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) + writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") + shell: Rscript {0} + + - name: Cache R packages + if: runner.os != 'Windows' + uses: actions/cache@v2 + with: + path: ${{ env.R_LIBS_USER }} + key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- + + - name: Install system dependencies + if: runner.os == 'Linux' + run: | + while read -r cmd + do + eval sudo $cmd + done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') + + - name: Install libssh + if: runner.os == 'Linux' + run: | + sudo apt-get install libssh-dev + + - name: Install dependencies + run: | + remotes::install_deps(dependencies = TRUE, INSTALL_opts=c("--no-multiarch")) + remotes::install_cran("rcmdcheck") + shell: Rscript {0} + + - name: Install covr + if: runner.os == 'macOS' + run: | + remotes::install_cran("covr") + shell: Rscript {0} + + - name: Remove check folder if exists + if: runner.os == 'macOS' + run: unlink("check", recursive = TRUE) + shell: Rscript {0} + + - name: Check + env: + _R_CHECK_CRAN_INCOMING_REMOTE_: false + run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch"), error_on = "warning", check_dir = "check") + shell: Rscript {0} + + - name: Upload check results + if: failure() + uses: actions/upload-artifact@v2 + with: + name: ${{ runner.os }}-r${{ matrix.config.r }}-results + path: check + + - name: Upload source package + if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master' + uses: actions/upload-artifact@v2 + with: + name: package_tarball + path: check/*.tar.gz + + - name: Test coverage + if: runner.os == 'macOS' + run: covr::codecov() + shell: Rscript {0} +