Add OMOP header genearator function
This commit is contained in:
parent
4e0f815228
commit
fabf605543
|
@ -139,3 +139,63 @@ createForeignKeys <- function(cdmVersion){
|
||||||
}
|
}
|
||||||
return(paste0(sql_result, collapse = ""))
|
return(paste0(sql_result, collapse = ""))
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
# A helper function that will return a character string with the omop ascii art given a major and minor cdm version
|
||||||
|
# example: cat(createAsciiHeader(5, 3))
|
||||||
|
createAsciiHeader <- function(major, minor) {
|
||||||
|
|
||||||
|
stopifnot(is.numeric(major), is.numeric(minor), length(major) == 1, length(minor) == 1)
|
||||||
|
stopifnot(major %in% 0:99, minor %in% 0:99)
|
||||||
|
|
||||||
|
# An inner function that returns an ascii art matrix for any number between 0 and 99
|
||||||
|
numberMatrix <- function(num){
|
||||||
|
stopifnot(is.numeric(num), num %in% 0:99)
|
||||||
|
|
||||||
|
# An inner function that returns a 7x7 matrix of number ascii art for the number 0 through 9
|
||||||
|
# for the number 1 a 7x5 matrix is returned because 1 is narrower than other numbers.
|
||||||
|
singleDigit <- function(num) {
|
||||||
|
nums <- c(' ### # ##### ##### # ####### ##### ####### ##### ##### # # ## # ## ## # # # ## # # ## ## # # # # ## # # # # # ## ## # # ##### ##### # # ###### ###### # ##### ####### # # # ######## ## # # # # # # # # # # # # # ## # # # ## # ### ##### ####### ##### # ##### ##### # ##### ##### ')
|
||||||
|
numsMatrix <- matrix(data = strsplit(nums, character(0))[[1]], nrow = 7, byrow = T)
|
||||||
|
cols <- seq(num*7+1, num*7+7, by = 1)
|
||||||
|
out <- numsMatrix[1:7, cols]
|
||||||
|
# the number 1 is narrower than the other numbers
|
||||||
|
if(num == 1) out<- out[1:7, 2:6]
|
||||||
|
out
|
||||||
|
}
|
||||||
|
|
||||||
|
if(num < 10){
|
||||||
|
return(singleDigit(num))
|
||||||
|
} else {
|
||||||
|
space <- matrix(rep(" ", 7), nrow = 7)
|
||||||
|
return(cbind(singleDigit(floor(num/10)), space, singleDigit(num %% 10)))
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
omop <- c('.
|
||||||
|
####### # # ####### ###### ##### ###### # # .
|
||||||
|
# # ## ## # # # # # # # # ## ## # #.
|
||||||
|
# # # # # # # # # # # # # # # # # # #.
|
||||||
|
# # # # # # # ###### # # # # # # # #.
|
||||||
|
# # # # # # # # # # # # # #.
|
||||||
|
# # # # # # # # # # # # # # # .
|
||||||
|
####### # # ####### # ##### ###### # # ## ')
|
||||||
|
|
||||||
|
# convert to matrix and remove first column
|
||||||
|
omop <- matrix(strsplit(omop, character(0))[[1]], nrow = 7, byrow = TRUE)
|
||||||
|
omop <- omop[,c(-1, -2)]
|
||||||
|
|
||||||
|
dot <- matrix(c(rep(" ", 3*4), rep("#", 3*3)), nrow = 7, byrow = TRUE)
|
||||||
|
space <- matrix(rep(" ", 7), nrow = 7)
|
||||||
|
newline <- matrix(rep("\n", 7, nrow = 7))
|
||||||
|
|
||||||
|
|
||||||
|
header <- character(0)
|
||||||
|
headerMatrix <- cbind(omop, space, numberMatrix(major), space, dot, space, numberMatrix(minor), newline)
|
||||||
|
for(i in 1:7) {
|
||||||
|
header <- c(header, as.character(headerMatrix[i,]))
|
||||||
|
}
|
||||||
|
header <- paste(header, collapse = "")
|
||||||
|
return(header)
|
||||||
|
}
|
||||||
|
|
Loading…
Reference in New Issue