91414a60c1
closes themis #158
2024-04-29 15:31:25 -04:00
5f55a89fd4
closes https://github.com/OHDSI/Themis/issues/126
2024-04-29 14:58:54 -04:00
f2f202d056
closes #684
2024-04-29 09:27:46 -04:00
6d80bb3f55
closes #672
2024-04-29 09:24:35 -04:00
6eaeab4e6a
closes #671
2024-04-29 09:21:59 -04:00
011f8e6ebb
closes #679
2024-04-24 17:21:49 -04:00
3806428b2d
closes #683
2024-04-24 17:17:36 -04:00
51f047b1a9
closes #653
2024-04-24 17:13:41 -04:00
8ee8a7b2f6
closes #666
2024-04-24 17:11:38 -04:00
4869f7c4ca
closes OHDSI/Themis #121
2024-04-24 17:07:03 -04:00
13fc5982ef
closes #682
2024-04-24 17:05:09 -04:00
b7e1111678
closes #665
2024-04-24 17:02:47 -04:00
98bea2c6f5
value_as_concept_id null
...
closes #641
2024-04-17 21:02:29 -04:00
802d9ee2a3
modifier_source_value
...
closes #655
2024-04-17 20:54:23 -04:00
f114b8d5fd
measurement_source_value
...
closes #647
2024-04-17 20:42:37 -04:00
b4d156c3c5
measurement_source_value
...
closes #646
2024-04-17 20:32:15 -04:00
a47cf59898
Link to measurement convention for negative values
2024-04-12 14:04:17 -04:00
a7d620f199
Html rendering
2024-04-12 13:03:53 -04:00
bf37173742
adding themis links to person table
2024-04-12 13:01:17 -04:00
fea8068294
themis links to drug table
2024-04-12 12:54:26 -04:00
2f0bb8229c
adding themis links to death table
2024-04-12 12:50:50 -04:00
47701541de
Links to themis for care_site
2024-04-12 12:47:42 -04:00
880d0b6eeb
updates measurement.unit_source_value text
...
closes #643
2024-04-12 12:21:47 -04:00
356cc6e7f0
updates observation text
...
closes #635 , #640
2024-04-12 12:20:22 -04:00
1889e31e1f
Update drug_concept_id text
...
closes #637
2024-04-12 12:12:13 -04:00
4aaf0140c5
update measurement_concept_Id text
...
closes #638
2024-04-12 12:10:18 -04:00
f9ebc22848
Updates to measurement unit concept id text
...
closes #642
2024-04-12 11:58:29 -04:00
8971ed2f66
Update gender_source_concept_id text
...
closes #631
2024-04-12 11:55:22 -04:00
611e810dbe
Update gender_source_value text
...
closes #632
2024-04-12 11:53:36 -04:00
8b74e16ce0
closes #546
2024-03-28 15:28:11 -04:00
8ed7a3908e
closes #550
2024-03-28 15:25:28 -04:00
4145f5bd97
closes #625
2024-03-28 13:41:01 -04:00
6333928fe0
Closes #587
2024-03-28 13:16:30 -04:00
03ce1d5260
Closes OHDSI/Themis 77
2024-03-28 13:09:11 -04:00
4e90a3529e
closes #595
2024-03-28 12:54:26 -04:00
46e13a1a3c
update days supply convention to v5.3 and v6.0
2023-12-09 10:57:32 +01:00
f39870c7d5
correct build of new files
...
includes consistent case for table names
proper directory structure
2023-09-06 13:22:41 -04:00
8fecffb215
Fix to CDM v5.3 Constraints
...
Removed constraint linking person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
2022-01-21 15:30:53 -05:00
f5841f55e4
upd: v5.3 / v5.4 docs for Era tables, use date type for *_date fields
2021-11-17 16:51:11 +01:00
9e4b5978c8
Bugfix to cdm v6.0
...
VISIT_DETAIL.admitting_source_value and admitting_souce_concept_id were renamed to admitted_from_concept_id and admitted_from_source_value.
2021-09-23 15:26:59 -04:00
5927b49a53
Multiple fixes
...
Fixed issue in CDM v5.3 field level csv, formatted rmd files, fixed documentation of the buildReleaseZip() function.
2021-09-23 10:42:24 -04:00
46da3238af
Documentation updates to support CDM v5.4
2021-09-22 15:39:44 -04:00
19462d322d
Add tests, github actions, and executeDdl function ( #425 )
...
* Add github actions workflow to build package and run tests.
* update Description file
* rename .Rproj file.
* Consolidate 'create' functions into one file.
* Add tests for create functions.
* update description
* removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.
* consolidate write functions into one file. Add execute function.
* update docs
* add tests for write and execute functions
* update documentation
* Add windows and linux runners in github actions.
* update github actions
* download drivers before running tests
* fix small error in setup test file.
* debug github actions
* debug github actions
* debug github actions
* debug github actions
* fix tiny bug
* comment out execute ddl test
* fix bug in test
* Add execute test back in
* revert accidental change in description
* add print statement for debugging schema error on github actions.
* Fix schema environment variable name
* Add comment to github actions workflow file.
* remove placeholder text in function documentation.
* Rename createdDdl.R to createDdl.R
Co-authored-by: Adam Black <adam.black@odysseusinc.com>
2021-08-19 11:49:36 -04:00
918b57bcca
Merge branch 'v5.4' into v5.4_cleanup
2021-08-18 16:06:08 -04:00
a4bfeccf83
function naming & additional cleanup
...
made create and write functions consistent
fixed render issue that was not including dialect name in generated files
added loop to codeToRun to generate all scripts.
2021-08-18 15:30:04 -04:00
Clair Blacketer
Maxim Moinat
Frank DeFalco
Clair Blacketer
flying-burrito
Adam Black
Frank DeFalco