Commit Graph

39 Commits

Author SHA1 Message Date
Clair Blacketer 3806428b2d closes #683 2024-04-24 17:17:36 -04:00
Clair Blacketer 51f047b1a9 closes #653 2024-04-24 17:13:41 -04:00
Clair Blacketer 8ee8a7b2f6 closes #666 2024-04-24 17:11:38 -04:00
Clair Blacketer 4869f7c4ca closes OHDSI/Themis #121 2024-04-24 17:07:03 -04:00
Clair Blacketer 13fc5982ef closes #682 2024-04-24 17:05:09 -04:00
Clair Blacketer b7e1111678 closes #665 2024-04-24 17:02:47 -04:00
Clair Blacketer 98bea2c6f5 value_as_concept_id null
closes #641
2024-04-17 21:02:29 -04:00
Clair Blacketer 802d9ee2a3 modifier_source_value
closes #655
2024-04-17 20:54:23 -04:00
Clair Blacketer f114b8d5fd measurement_source_value
closes #647
2024-04-17 20:42:37 -04:00
Clair Blacketer b4d156c3c5 measurement_source_value
closes #646
2024-04-17 20:32:15 -04:00
Clair Blacketer a47cf59898 Link to measurement convention for negative values 2024-04-12 14:04:17 -04:00
Clair Blacketer a7d620f199 Html rendering 2024-04-12 13:03:53 -04:00
Clair Blacketer bf37173742 adding themis links to person table 2024-04-12 13:01:17 -04:00
Clair Blacketer fea8068294 themis links to drug table 2024-04-12 12:54:26 -04:00
Clair Blacketer 2f0bb8229c adding themis links to death table 2024-04-12 12:50:50 -04:00
Clair Blacketer 47701541de Links to themis for care_site 2024-04-12 12:47:42 -04:00
Clair Blacketer 880d0b6eeb updates measurement.unit_source_value text
closes #643
2024-04-12 12:21:47 -04:00
Clair Blacketer 356cc6e7f0 updates observation text
closes #635, #640
2024-04-12 12:20:22 -04:00
Clair Blacketer 1889e31e1f Update drug_concept_id text
closes #637
2024-04-12 12:12:13 -04:00
Clair Blacketer 4aaf0140c5 update measurement_concept_Id text
closes #638
2024-04-12 12:10:18 -04:00
Clair Blacketer f9ebc22848 Updates to measurement unit concept id text
closes #642
2024-04-12 11:58:29 -04:00
Clair Blacketer 8971ed2f66 Update gender_source_concept_id text
closes #631
2024-04-12 11:55:22 -04:00
Clair Blacketer 611e810dbe Update gender_source_value text
closes #632
2024-04-12 11:53:36 -04:00
Clair Blacketer 8b74e16ce0 closes #546 2024-03-28 15:28:11 -04:00
Clair Blacketer 8ed7a3908e closes #550 2024-03-28 15:25:28 -04:00
Clair Blacketer 4145f5bd97 closes #625 2024-03-28 13:41:01 -04:00
Clair Blacketer 6333928fe0 Closes #587 2024-03-28 13:16:30 -04:00
Clair Blacketer 03ce1d5260 Closes OHDSI/Themis 77 2024-03-28 13:09:11 -04:00
Clair Blacketer 4e90a3529e closes #595 2024-03-28 12:54:26 -04:00
Maxim Moinat 46e13a1a3c
update days supply convention to v5.3 and v6.0 2023-12-09 10:57:32 +01:00
Frank DeFalco f39870c7d5 correct build of new files
includes consistent case for table names
proper directory structure
2023-09-06 13:22:41 -04:00
Clair Blacketer 8fecffb215 Fix to CDM v5.3 Constraints
Removed constraint linking person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
2022-01-21 15:30:53 -05:00
flying-burrito f5841f55e4 upd: v5.3 / v5.4 docs for Era tables, use date type for *_date fields 2021-11-17 16:51:11 +01:00
Clair Blacketer 9e4b5978c8 Bugfix to cdm v6.0
VISIT_DETAIL.admitting_source_value and admitting_souce_concept_id were renamed to admitted_from_concept_id and admitted_from_source_value.
2021-09-23 15:26:59 -04:00
Clair Blacketer 5927b49a53 Multiple fixes
Fixed issue in CDM v5.3 field level csv, formatted rmd files, fixed documentation of the buildReleaseZip() function.
2021-09-23 10:42:24 -04:00
Clair Blacketer 46da3238af Documentation updates to support CDM v5.4 2021-09-22 15:39:44 -04:00
Adam Black 19462d322d
Add tests, github actions, and executeDdl function (#425)
* Add github actions workflow to build package and run tests.

* update Description file

* rename .Rproj file.

* Consolidate 'create' functions into one file.

* Add tests for create functions.

* update description

* removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.

* consolidate write functions into one file. Add execute function.

* update docs

* add tests for write and execute functions

* update documentation

* Add windows and linux runners in github actions.

* update github actions

* download drivers before running tests

* fix small error in setup test file.

* debug github actions

* debug github actions

* debug github actions

* debug github actions

* fix tiny bug

* comment out execute ddl test

* fix bug in test

* Add execute test back in

* revert accidental change in description

* add print statement for debugging schema error on github actions.

* Fix schema environment variable name

* Add comment to github actions workflow file.

* remove placeholder text in function documentation.

* Rename createdDdl.R to createDdl.R

Co-authored-by: Adam Black <adam.black@odysseusinc.com>
2021-08-19 11:49:36 -04:00
Frank DeFalco 918b57bcca Merge branch 'v5.4' into v5.4_cleanup 2021-08-18 16:06:08 -04:00
Frank DeFalco a4bfeccf83 function naming & additional cleanup
made create and write functions consistent
fixed render issue that was not including dialect name in generated files
added loop to codeToRun to generate all scripts.
2021-08-18 15:30:04 -04:00