mz-health/OMOP
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OMOP
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32 Commits

Author SHA1 Message Date
clairblacketer ab8a55dfa3
Merge pull request #540 from MaximMoinat/er-diagram 
OMOP CDM ER Diagram challenge 2022
 2025-03-06 09:32:45 -05:00
clairblacketer f8c78f882c
Merge pull request #469 from OHDSI/v5.4_conversions 
CDM v5.3 to v5.4 conversion scripts
 2025-03-06 09:14:41 -05:00
Clair Blacketer 5fa4ad33cb Removing test that caused issues with downstream packages 2024-09-30 18:30:03 -04:00
Yaroslav Halchenko dceb3a182b [DATALAD RUNCMD] run codespell throughout fixing typos automagically 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
 2024-03-28 15:31:24 -04:00
Clair Blacketer c1c8e6a4f0 Full website, ddl, indices, and primary key updates 2024-03-28 15:09:22 -04:00
Frank DeFalco 1ac9880f40 updates to documentation and build status 2023-10-26 14:13:30 -04:00
Frank DeFalco 1bcb2236e8 resolved issues with CHECK and tests. 2023-09-07 13:52:20 -04:00
Clair Blacketer 49338d1c1f Adding GIS and Medical Imaging to the calendar 2023-02-13 13:49:07 -05:00
Clair Blacketer 4432382693 Minor updates to package 
This release has some minor bugfixes and updates to the rmd files
 2023-02-08 15:04:22 -05:00
Maxim Moinat 0c07bfe881
add option to only include subset of tables 2022-12-01 13:59:57 +01:00
Maxim Moinat 759270d000
create ER diagram from OMOP CDM specification 2022-11-30 16:12:26 +01:00
alex-odysseus 07d0383ac8 Missing commit 3e19695be38a2565f6b187b99ec13575b8767165 from the 'synapse' branch 2022-09-26 17:59:28 +02:00
ssuvorov-fls e1e010a3df added snowflake support 2022-03-30 10:53:52 +03:00
AnthonyMolinaro c4ab611981
Update bigquery_migration.sql 2022-03-04 13:08:46 -05:00
AnthonyMolinaro 4ac3d61c6f
Update impala_migration.sql 2022-03-04 13:08:30 -05:00
AnthonyMolinaro 074bd288f8
Update netezza_migration.sql 2022-03-04 13:07:48 -05:00
AnthonyMolinaro 65166e4bd7
Update oracle_migration.sql 2022-03-04 13:07:29 -05:00
AnthonyMolinaro e10628d954
Update postgresql_migration.sql 2022-03-04 13:07:10 -05:00
AnthonyMolinaro bdb5789d4a
Update sqlserver_migration.sql 2022-03-04 13:05:50 -05:00
AnthonyMolinaro 2c61a520fb
Update redshift_migration.sql 
Typo in measurement - column should be unit_source_concept_id, not unit_source_id
 2022-03-04 13:00:26 -05:00
AnthonyMolinaro 64a8fd6645 Script to assist in migration from 6.0 to 5.4 2022-01-27 16:23:19 -05:00
Clair Blacketer af1effdedc Added reference to the package 2022-01-21 15:35:13 -05:00
Clair Blacketer f006431a5e Bug fixes and updates from Nov 2021 - Jan 2022 2022-01-13 13:59:03 -05:00
AnthonyMolinaro 2456c66c62 CDM v5.3 to v5.4 conversion scripts, initial commit 2022-01-06 16:08:16 -05:00
Clair Blacketer 46da3238af Documentation updates to support CDM v5.4 2021-09-22 15:39:44 -04:00
Maxim Moinat b3fddfbb85
Function to Build Release Zips (#429) 
* buildRelease and buildReleaseZip

* add buildRelease
 2021-08-19 15:43:34 -04:00
Adam Black 19462d322d
Add tests, github actions, and executeDdl function (#425) 
* Add github actions workflow to build package and run tests.

* update Description file

* rename .Rproj file.

* Consolidate 'create' functions into one file.

* Add tests for create functions.

* update description

* removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.

* consolidate write functions into one file. Add execute function.

* update docs

* add tests for write and execute functions

* update documentation

* Add windows and linux runners in github actions.

* update github actions

* download drivers before running tests

* fix small error in setup test file.

* debug github actions

* debug github actions

* debug github actions

* debug github actions

* fix tiny bug

* comment out execute ddl test

* fix bug in test

* Add execute test back in

* revert accidental change in description

* add print statement for debugging schema error on github actions.

* Fix schema environment variable name

* Add comment to github actions workflow file.

* remove placeholder text in function documentation.

* Rename createdDdl.R to createDdl.R

Co-authored-by: Adam Black <adam.black@odysseusinc.com>
 2021-08-19 11:49:36 -04:00
Frank DeFalco a4bfeccf83 function naming & additional cleanup 
made create and write functions consistent
fixed render issue that was not including dialect name in generated files
added loop to codeToRun to generate all scripts.
 2021-08-18 15:30:04 -04:00
Maxim Moinat 8d29222563 refactor index creation and cleanup codeToRun 2021-08-18 19:42:01 +02:00
Maxim Moinat 5d9887a356 refactor create and write sql for foreign key and primary key 2021-08-18 19:28:21 +02:00
Maxim Moinat f8cd93d159 refactoring of create and write DDL 2021-08-18 19:02:22 +02:00
Clair Blacketer f892dac55d Moved R project from CdmDdlBase 
This commit pulls the R project over from the CdmDdlBase repository. This will be the jumping-off code for the new OMOP CDM repo.
 2021-06-08 20:19:01 -04:00