mz-health/OMOP
mz-health
/
OMOP
mirror of https://github.com/OHDSI/CommonDataModel.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
359 Commits 20 Branches 19 Tags 22 MiB
Commit Graph

156 Commits

Author SHA1 Message Date
clairblacketer 91f8d70ddc
Update PAYER_PLAN_PERIOD.md 2018-02-22 15:22:27 -05:00
clairblacketer e853fe2ddd
Merge branch 'master' into cdm_v5.3.-bugfix.2 2018-02-07 19:54:09 -05:00
clairblacketer 6dc7f67106
Merge branch 'master' into cdm_v5.3.-issue-149 2018-02-07 19:51:51 -05:00
clairblacketer 990a1a1e89
Merge branch 'master' into cdm_V5.3.-issue-150 2018-02-07 19:49:16 -05:00
clairblacketer 297885eaa2
Merge branch 'master' into master 2018-02-07 19:26:02 -05:00
Clair Blacketer 9bfa59a43e closes #140, #144, #135 2018-02-07 15:25:57 -05:00
Clair Blacketer 4949f3d301 Closes #149, vocabulary_version no longer required 2018-02-07 14:55:24 -05:00
Clair Blacketer 2c952dca98 Addresses #150, adding time back in to the measurement table for backwards compatibility 2018-02-07 14:18:39 -05:00
clairblacketer df6ae34dd1
Merge pull request #142 from OHDSI/CDM_v5.3.0 
Cdm v5.3.0
 2018-01-03 15:04:26 -05:00
Clair Blacketer 9a66851f0d Final cdm v5.3 addition, moved new DDLs to correct locations 2018-01-03 14:56:42 -05:00
clairblacketer cf3d1c60aa
added images 2017-12-11 08:58:51 -05:00
clairblacketer 83811a30ca Added FAQ page 2017-12-11 08:41:40 -05:00
clairblacketer 8be1708769 Small changes to align documentation and DDL 2017-11-16 12:19:22 -05:00
clairblacketer f298b0c446 Added SqlRender functionality to the DDLGeneratr package and incorporated the pdf creation. 2017-11-09 14:44:52 -05:00
clairblacketer afd9a520d9 Addresses #64, #70, #79, #92, #120, #132, #131 in code, documentation is still being updated to reflect these changes. 2017-11-09 09:30:50 -05:00
Gowtham Rao 98f2927cc9
Updates to payer plan period based on proposal accepted by CDM workgroup 
Updated based on acceptance of https://github.com/OHDSI/CommonDataModel/issues/120
 2017-11-06 05:29:17 -05:00
clairblacketer df2d439ac0 Merge pull request #116 from gowthamrao/master 
visit_detail - some minor corrections - condition_occurrence and visit_type_concept_id
 2017-10-02 14:36:20 -04:00
Sigfried Gold c579fe6ba1 Update VISIT_DETAIL.md 2017-09-26 06:55:42 -04:00
Gowtham Rao 3b6bcd01f6 Update VISIT_DETAIL.md 
Correction - visit_detail_concept_id should be just visit_concept_id; because in the same domain. Otherwise we will have to systematically rename all _concept_id fields in visit_detail into _detail_concept_id; e.g. 

visit_type_concept_id to visit_detail_type_concept_id
admitting_source_concept_id to admitting_detail_source_concept_id

makes it long and difficult in join statements etc
 2017-09-18 06:41:58 -04:00
gowthamrao 2a6bcd0c5e correction to condition_occurrence - missing visit_detail_id 2017-09-15 12:05:41 -04:00
Christian Reich e79f62d827 Merge pull request #102 from gowthamrao/master 
Committing visit_detail description
 2017-09-09 14:23:57 -04:00
Gowtham Rao 23d2d6398e Update VISIT_DETAIL.md 2017-09-09 12:53:49 -04:00
Gowtham Rao 4a166f5c2b Updated descriptions and conventions 
Updated based on https://github.com/OHDSI/WebAPI/pull/234#issuecomment-323076164
 2017-08-17 16:33:25 -04:00
Gowtham Rao dea7811c48 Update OBSERVATION_PERIOD.md 2017-08-14 12:34:24 -04:00
Gowtham Rao 319561e06e Update VISIT_DETAIL.md 2017-08-11 16:23:01 -04:00
Gowtham Rao 4b1b256e6f Update VISIT_DETAIL.md 
visit_detail tables

https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:12:35 -04:00
Gowtham Rao d072999031 Update OBSERVATION.md 
added visit_detail_id
https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:11:26 -04:00
Gowtham Rao 56a8b4a95e Update MEASUREMENT.md 
added visit_detail_id
https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:10:23 -04:00
Gowtham Rao fbee7bcfb1 Update MEASUREMENT.md 2017-08-11 15:09:46 -04:00
Gowtham Rao 62ca39f36c Update DRUG_EXPOSURE.md 
added visit_detail_id
https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:08:41 -04:00
Gowtham Rao f3434fc614 Update DEVICE_EXPOSURE.md 
added visit_detail_id

https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:05:29 -04:00
Gowtham Rao 62c4ef6f02 Update PROCEDURE_OCCURRENCE.md 
added visit_detail_id
https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 15:04:32 -04:00
Gowtham Rao 6cd6b7029a Update CONDITION_OCCURRENCE.md 
added visit_detail_id
 2017-08-11 15:01:54 -04:00
Gowtham Rao 4fc67257ca Committing visit_detail description 
https://github.com/OHDSI/CommonDataModel/issues/70
 2017-08-11 12:12:42 -04:00
clairblacketer 1a146846c8 Merge branch 'master' into CDM_v5.2.0 2017-07-20 11:22:49 -04:00
clairblacketer a9c28a9d71 Removed old pdf and replaced with new pdf. 2017-07-20 10:26:32 -04:00
clairblacketer 01e61f2bac Updates to documentation and creation of CDM_v5.2 pdf. 2017-07-20 10:22:46 -04:00
clairblacketer a95eaac9e2 Updated NOTE and NOTE_NLP for pdf syntax. 2017-07-20 08:50:47 -04:00
clairblacketer 2bc655d4a2 Updated R script for CDM v5.2 pdf 2017-07-19 15:58:53 -04:00
clairblacketer 068e3783b4 Added links to header files. 2017-07-19 15:13:52 -04:00
clairblacketer 0f117255fe CDM documentation updates for v5.2 2017-07-19 15:05:32 -04:00
clairblacketer 00c97dbe70 Revert "CDM Documentation updates for v5.2" 
This reverts commit 36b2af6a27.

This documentation was added to the master branch in error. Instead it will be added to branch CDM_v5.2.0
 2017-07-19 14:31:42 -04:00
clairblacketer 36b2af6a27 CDM Documentation updates for v5.2 2017-07-19 11:56:11 -04:00
clairblacketer 799ae43f51 Initial commit of wiki files to master branch. 2017-07-19 11:29:45 -04:00
clairblacketer 2363a59799 Update MD_to_PDF_conversion.R 
Changed file path to output file so it won't be hidden in the documentation folder.
 2017-06-21 08:58:43 -04:00
clairblacketer 2b85fca018 Added codeexcerpts folder 2017-06-21 08:53:07 -04:00
clairblacketer 698b2a0924 Added CDM v5.1.0 pdf 2017-06-20 16:15:34 -04:00
clairblacketer 03f848db9f Removed documentation files that are now in the wiki 2017-06-20 16:00:24 -04:00
clairblacketer f7ea9da12b Added R project to create pdf 2017-06-20 09:04:54 -04:00
clairblacketer 014eafca1b fixed link color 2017-06-16 15:55:59 -04:00
clairblacketer 1ba30df32a Minor changes to report.Rmd 2017-06-16 15:23:39 -04:00
clairblacketer 99fc33871c Fixed link 2017-06-16 15:07:17 -04:00
clairblacketer 987b68697d Removed header as this will be part of the .Rmd 2017-06-16 14:58:41 -04:00
clairblacketer dbecee7baa Fixed image address 2017-06-16 14:30:45 -04:00
clairblacketer 226b20160d Updated report.Rmd 2017-06-16 14:28:24 -04:00
clairblacketer 8ae79533d2 Added report.Rmd 2017-06-16 14:11:02 -04:00
clairblacketer 7014860d77 Update links 2017-06-14 21:23:37 -04:00
clairblacketer a8d03c6e63 Update DRUG_STRENGTH table 2017-06-14 21:17:30 -04:00
clairblacketer b0ff4a470a Update SOURCE_TO_CONCEPT_MAP 2017-06-14 21:08:07 -04:00
clairblacketer 05051a0534 Update CONCEPT_SYNONYM 2017-06-14 21:04:46 -04:00
clairblacketer 59e457ef93 Update RELATIONSHIP 2017-06-14 21:01:34 -04:00
clairblacketer 52ba9b2e0c Added links 2017-06-14 20:57:22 -04:00
clairblacketer b4a3077f81 Update CONCEPT_ANCESTOR 2017-06-14 20:52:12 -04:00
clairblacketer 3c750920c0 Update COHORT_DEFINITION 2017-06-14 20:48:38 -04:00
clairblacketer 42ce527bfc Update ATTRIBUTE_DEFINITION 2017-06-14 20:45:16 -04:00
clairblacketer 7af9109617 Merge branch 'master' of https://github.com/OHDSI/CommonDataModel 2017-06-14 20:37:26 -04:00
clairblacketer 147292197b Added COHORT.md 2017-06-14 20:37:06 -04:00
clairblacketer 32aebd7553 Update CONCEPT_RELATIONSHIP 2017-06-14 20:32:07 -04:00
clairblacketer ff27904f4d Merge branch 'master' of https://github.com/OHDSI/CommonDataModel 2017-06-14 20:24:23 -04:00
clairblacketer b9f6e5bd8f Added the rest of the vocabulary files 2017-06-14 20:24:05 -04:00
clairblacketer 216d934d0d Update links 2017-06-14 14:23:11 -04:00
clairblacketer fcc483a14e Updated links to domain and concept_class 2017-06-14 14:22:38 -04:00
clairblacketer a7ee82c0ef Added CONCEPT_CLASS.md 2017-06-14 14:18:22 -04:00
clairblacketer 8dfa6eb4af Update links in DOMAIN.md 2017-06-14 14:12:04 -04:00
clairblacketer 5cc8863e48 Update links in DOMAIN 2017-06-14 14:08:57 -04:00
clairblacketer ba7d973b29 Added DOMAIN.md 2017-06-14 14:06:59 -04:00
clairblacketer 369cdf7cb5 Update VOCABULARY.md table headers 2017-06-14 13:56:34 -04:00
clairblacketer 9ca1465cf1 Added VOCABULARY.md 2017-06-14 13:53:16 -04:00
clairblacketer 231b100c14 Table headers 
Left justify table headers in CONCEPT.md
 2017-06-14 13:02:38 -04:00
clairblacketer c0fb8c8934 Added a link to the ohdsi wiki 
Updated a link to the ohdsi vocabulary specifications on ohdsi.org
 2017-06-14 12:59:40 -04:00
clairblacketer 54f7a4b315 Added link to CONCEPT.md 2017-06-14 12:55:20 -04:00
clairblacketer 8f7ed411f7 Added CONCEPT.md 2017-06-14 12:54:16 -04:00
clairblacketer 3c94f1facb Merge branch 'master' of https://github.com/OHDSI/CommonDataModel 2017-06-14 12:34:51 -04:00
clairblacketer 8ede600841 Fixed folder names 2017-06-14 12:34:35 -04:00
clairblacketer bf79f9f7c4 Update links in table of contents 2017-06-14 12:33:29 -04:00
clairblacketer 6a70eecd07 Added StandardizedVocabularies.md 2017-06-14 12:31:43 -04:00
clairblacketer b9d157dae2 Update table of contents 2017-06-14 12:19:25 -04:00
clairblacketer 937bf3b5ea Update table of contents 
Added full list of tables in CDM v5.1
 2017-06-14 12:18:27 -04:00
clairblacketer b88500e638 Fixed link 2017-06-14 11:50:26 -04:00
clairblacketer 81bed98304 Fixed link 2017-06-14 11:50:07 -04:00
clairblacketer 6e6260714c Fixed link 2017-06-14 11:49:09 -04:00
clairblacketer 0d8e0b730a Fixed table of contents link 2017-06-14 11:48:22 -04:00
clairblacketer bc30ad820b Added license to table of contents 2017-06-14 11:36:48 -04:00
clairblacketer 4a772ce00c Fixed list of links in background 2017-06-14 11:32:52 -04:00
clairblacketer ce0d82b793 Remove unnecessary link 2017-06-14 11:31:19 -04:00
clairblacketer 148307b887 Update Table of Contents list 2017-06-14 11:30:44 -04:00
clairblacketer 4d4a9a3cc5 Minor bug fixes to documentation 2017-06-14 11:23:27 -04:00
clairblacketer 5d65dde09c Added TableofContents.md 2017-06-14 11:14:15 -04:00
clairblacketer 7dfa389682 Minor documentation changes 2017-06-14 10:54:06 -04:00
clairblacketer abcbb9fd42 Added 'Design Principles.md' 2017-06-14 10:50:00 -04:00