testDatabases <- c("postgresql") if (Sys.getenv("CDM5_POSTGRESQL_SERVER") != "") { library(DatabaseConnector) if (dir.exists(Sys.getenv("DATABASECONNECTOR_JAR_FOLDER"))) { jdbcDriverFolder <- Sys.getenv("DATABASECONNECTOR_JAR_FOLDER") } else { jdbcDriverFolder <- file.path(tempdir(), "jdbcDrivers") dir.create(jdbcDriverFolder, showWarnings = FALSE) DatabaseConnector::downloadJdbcDrivers("all", pathToDriver = jdbcDriverFolder) Sys.setenv(DATABASECONNECTOR_JAR_FOLDER = jdbcDriverFolder) withr::defer({ unlink(jdbcDriverFolder, recursive = TRUE, force = TRUE) }, testthat::teardown_env()) } } else { message("Skipping driver setup because environmental variables not set") } # Helper functions used in tests getConnectionDetails <- function(dbms) { switch ( dbms, "postgresql" = createConnectionDetails( dbms = "postgresql", user = Sys.getenv("CDMDDLBASE_POSTGRESQL_USER"), password = Sys.getenv("CDMDDLBASE_POSTGRESQL_PASSWORD"), server = Sys.getenv("CDMDDLBASE_POSTGRESQL_SERVER"), pathToDriver = jdbcDriverFolder ), "redshift" = createConnectionDetails( dbms = "redshift", user = Sys.getenv("CDMDDLBASE_REDSHIFT_USER"), password = Sys.getenv("CDMDDLBASE_REDSHIFT_PASSWORD"), server = Sys.getenv("CDMDDLBASE_REDSHIFT_SERVER"), pathToDriver = jdbcDriverFolder ), "sql server" = createConnectionDetails( dbms = "sql server", user = Sys.getenv("CDMDDLBASE_SQL_SERVER_USER"), password = Sys.getenv("CDMDDLBASE_SQL_SERVER_PASSWORD"), server = Sys.getenv("CDMDDLBASE_SQL_SERVER_SERVER"), pathToDriver = jdbcDriverFolder ), "oracle" = createConnectionDetails( dbms = "oracle", user = Sys.getenv("CDMDDLBASE_ORACLE_USER"), password = Sys.getenv("CDMDDLBASE_ORACLE_PASSWORD"), server = Sys.getenv("CDMDDLBASE_ORACLE_SERVER"), pathToDriver = jdbcDriverFolder ) ) } getSchema <- function(dbms) { switch ( dbms, "postgresql" = Sys.getenv("CDMDDLBASE_POSTGRESQL_SCHEMA"), "redshift" = Sys.getenv("CDMDDLBASE_REDSHIFT_SCHEMA"), "sql server" = Sys.getenv("CDMDDLBASE_SQL_SERVER_CDM_SCHEMA"), "oracle" = Sys.getenv("CDMDDLBASE_ORACLE_CDM_SCHEMA") ) } listTablesInSchema <- function(connectionDetails, schema) { stopifnot( "ConnectionDetails" %in% class(connectionDetails), class(schema) == "character", length(schema) == 1 ) stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle")) con <- DatabaseConnector::connect(connectionDetails) on.exit(DatabaseConnector::disconnect(con)) dbms <- connectionDetails$dbms if (dbms %in% c("postgresql", "redshift", "sql server")) { tables <- dbGetQuery( con, paste0( "select table_name from information_schema.tables where table_schema = '", schema, "'" ) )[[1]] } else if (dbms == "oracle") { query <- paste0( "select table_name from all_tables where owner = '", toupper(schema), "' and tablespace_name = 'USERS'" ) tables <- dbGetQuery(con, query)[[1]] } return(tables) } dropAllTablesFromSchema <- function(connectionDetails, schema) { stopifnot( "ConnectionDetails" %in% class(connectionDetails), class(schema) == "character", length(schema) == 1 ) stopifnot(connectionDetails$dbms %in% c("postgresql", "redshift", "sql server", "oracle")) tableNames <- listTablesInSchema(connectionDetails, schema) con <- DatabaseConnector::connect(connectionDetails) on.exit(DatabaseConnector::disconnect(con)) dbms <- connectionDetails$dbms if (dbms %in% c("redshift", "postgresql", "sql server")) { for (tableName in tableNames) { DBI::dbExecute(con, paste( "DROP TABLE IF EXISTS", paste(schema, tableName, sep = "."), "CASCADE" )) } } else if (dbms == "oracle") { for (tableName in tableNames) { DBI::dbExecute(con, paste("DROP TABLE IF EXISTS", tableName, "CASCADE")) } } }