library(DatabaseConnector) ##### Oracle Testing oracleConnect <- DatabaseConnector::createConnectionDetails(dbms = "oracle", user = Sys.getenv("CDM5_ORACLE_USER"), password = Sys.getenv("CDM5_ORACLE_PASSWORD"), server = Sys.getenv("CDM5_ORACLE_SERVER"), schema = Sys.getenv("CDM5_ORACLE_CDM_SCHEMA")) conn <- DatabaseConnector::connect(connectionDetails = oracleConnect) ## Run oracle ddl sql <- SqlRender::readSql(paste0("output/oracle/OMOP CDM oracle ", cdmVersion," ddl.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run oracle primary keys sql <- SqlRender::readSql(paste0("output/oracle/OMOP CDM oracle ", cdmVersion," primary keys.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run oracle constraints sql <- SqlRender::readSql(paste0("output/oracle/OMOP CDM oracle ", cdmVersion," constraints.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run oracle indices sql <- SqlRender::readSql(paste0("output/oracle/OMOP CDM oracle ", cdmVersion," indices.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Remove oracle tables sql <- SqlRender::readSql(paste0("output/oracle/oracle testCleanUp ", "v5_3_1",".sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) DatabaseConnector::disconnect(conn) ########################################################################## ##### Postgres Testing postgresConnect <- DatabaseConnector::createConnectionDetails(dbms = "postgresql", user = Sys.getenv("CDM5_POSTGRESQL_USER"), password = Sys.getenv("CDM5_POSTGRESQL_PASSWORD"), server = Sys.getenv("CDM5_POSTGRESQL_SERVER"), schema = Sys.getenv("CDM5_POSTGRESQL_OHDSI_SCHEMA")) conn <- DatabaseConnector::connect(connectionDetails = postgresConnect) ## Run postgres ddl sql <- SqlRender::readSql(paste0("output/postgresql/OMOP CDM postgresql ", cdmVersion," ddl.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run postgres primary keys sql <- SqlRender::readSql(paste0("output/postgresql/OMOP CDM postgresql", cdmVersion," primary keys.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run postgres constraints sql <- SqlRender::readSql(paste0("output/postgresql/OMOP CDM postgresql ", cdmVersion," constraints.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run postgres indices sql <- SqlRender::readSql(paste0("output/postgresql/OMOP CDM postgresql ", cdmVersion," indices.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Remove postgres tables sql <- SqlRender::readSql(paste0("output/postgresql/postgresql testCleanUp ", "v5_3_1",".sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) DatabaseConnector::disconnect(conn) ##### Sql Server Testing sqlServerConnect <- DatabaseConnector::createConnectionDetails(dbms = "sql server", user = Sys.getenv("CDM5_SQL_SERVER_USER"), password = Sys.getenv("CDM5_SQL_SERVER_PASSWORD"), server = Sys.getenv("CDM5_SQL_SERVER_SERVER"), schema = Sys.getenv("CDM5_SQL_SERVER_OHDSI_SCHEMA")) conn <- DatabaseConnector::connect(connectionDetails = sqlServerConnect) ## Create sql server tables sql <- SqlRender::readSql(paste0("output/sql server/OMOP CDM sql server ", cdmVersion," ddl.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run sql server primary keys and indices sql <- SqlRender::readSql(paste0("output/sql server/OMOP CDM sql server ", cdmVersion," primary keys.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run sql server constraints sql <- SqlRender::readSql(paste0("output/sql server/OMOP CDM sql server ", cdmVersion," constraints.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Run sql server indices sql <- SqlRender::readSql(paste0("output/sql server/OMOP CDM sql server ", cdmVersion," indices.sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) ## Remove sql server tables sql <- SqlRender::readSql(paste0("output/sql server/sql server testCleanUp ", "v6_0",".sql")) DatabaseConnector::executeSql(connection = conn, sql = sql, progressBar = TRUE ) DatabaseConnector::disconnect(conn)