/********************************************************************************* # Copyright 2014 Observational Health Data Sciences and Informatics # # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. ********************************************************************************/ /************************ ####### # # ####### ###### ##### ###### # # ##### ### ###### # # ##### # # ## ## # # # # # # # # ## ## # # # # # # # # # # # # #### # # #### ##### ##### ## # # # ##### #### # # # # # # # # # # # # # # # # # # # # # # # # # # # # # ## # # # # # # # # ## # # # # # # # # # # ###### # # # # # # # # ###### # # ###### ### # # # # # # #### # # # # # # # # # # #### # # # # # # # # # # # # # # # # ### # # # # # # # # # # # # # ##### ###### # # # # # # # # # # # # # # # # # # # # # # # ### # # # # # # # # # # ## # # # # # # # # # ## # # # ####### # # ####### # ##### ###### # # ## ##### ### ### # # # ##### #### # # #### # # # # # # # # # #### netezza script to create the required primary keys within the OMOP common data model, version 6.0 last revised: 30-Aug-2018 author: Patrick Ryan, Clair Blacketer description: These primary keys are considered a minimal requirement to ensure adequate performance of analyses. *************************/ /************************ ************************* ************************* ************************* Primary key constraints ************************* ************************* ************************* ************************/ /************************ Standardized vocabulary ************************/ ALTER TABLE ohdsi.concept ADD CONSTRAINT xpk_concept PRIMARY KEY (concept_id); ALTER TABLE ohdsi.vocabulary ADD CONSTRAINT xpk_vocabulary PRIMARY KEY (vocabulary_id); ALTER TABLE ohdsi.domain ADD CONSTRAINT xpk_domain PRIMARY KEY (domain_id); ALTER TABLE ohdsi.concept_class ADD CONSTRAINT xpk_concept_class PRIMARY KEY (concept_class_id); ALTER TABLE ohdsi.concept_relationship ADD CONSTRAINT xpk_concept_relationship PRIMARY KEY (concept_id_1,concept_id_2,relationship_id); ALTER TABLE ohdsi.relationship ADD CONSTRAINT xpk_relationship PRIMARY KEY (relationship_id); ALTER TABLE ohdsi.concept_ancestor ADD CONSTRAINT xpk_concept_ancestor PRIMARY KEY (ancestor_concept_id,descendant_concept_id); ALTER TABLE ohdsi.source_to_concept_map ADD CONSTRAINT xpk_source_to_concept_map PRIMARY KEY (source_vocabulary_id,target_concept_id,source_code,valid_end_date); ALTER TABLE ohdsi.drug_strength ADD CONSTRAINT xpk_drug_strength PRIMARY KEY (drug_concept_id, ingredient_concept_id); ALTER TABLE ohdsi.cohort_definition ADD CONSTRAINT xpk_cohort_definition PRIMARY KEY (cohort_definition_id); ALTER TABLE ohdsi.attribute_definition ADD CONSTRAINT xpk_attribute_definition PRIMARY KEY (attribute_definition_id); /************************** Standardized meta-data ***************************/ /************************ Standardized clinical data ************************/ /**PRIMARY KEY NONCLUSTERED constraints**/ ALTER TABLE ohdsi.person ADD CONSTRAINT xpk_person PRIMARY KEY ( person_id ) ; ALTER TABLE ohdsi.observation_period ADD CONSTRAINT xpk_observation_period PRIMARY KEY ( observation_period_id ) ; ALTER TABLE ohdsi.specimen ADD CONSTRAINT xpk_specimen PRIMARY KEY ( specimen_id ) ; ALTER TABLE ohdsi.death ADD CONSTRAINT xpk_death PRIMARY KEY ( person_id ) ; ALTER TABLE ohdsi.visit_occurrence ADD CONSTRAINT xpk_visit_occurrence PRIMARY KEY ( visit_occurrence_id ) ; ALTER TABLE ohdsi.visit_detail ADD CONSTRAINT xpk_visit_detail PRIMARY KEY ( visit_detail_id ) ; ALTER TABLE ohdsi.procedure_occurrence ADD CONSTRAINT xpk_procedure_occurrence PRIMARY KEY ( procedure_occurrence_id ) ; ALTER TABLE ohdsi.drug_exposure ADD CONSTRAINT xpk_drug_exposure PRIMARY KEY ( drug_exposure_id ) ; ALTER TABLE ohdsi.device_exposure ADD CONSTRAINT xpk_device_exposure PRIMARY KEY ( device_exposure_id ) ; ALTER TABLE ohdsi.condition_occurrence ADD CONSTRAINT xpk_condition_occurrence PRIMARY KEY ( condition_occurrence_id ) ; ALTER TABLE ohdsi.measurement ADD CONSTRAINT xpk_measurement PRIMARY KEY ( measurement_id ) ; ALTER TABLE ohdsi.note ADD CONSTRAINT xpk_note PRIMARY KEY ( note_id ) ; ALTER TABLE ohdsi.note_nlp ADD CONSTRAINT xpk_note_nlp PRIMARY KEY ( note_nlp_id ) ; ALTER TABLE ohdsi.observation ADD CONSTRAINT xpk_observation PRIMARY KEY ( observation_id ) ; ALTER TABLE ohdsi.survey ADD CONSTRAINT xpk_survey PRIMARY KEY ( survey_occurrence_id ) ; ALTER TABLE ohdsi.episode_event ADD CONSTRAINT episode_event_pk PRIMARY KEY ( episode_id, event_id, event_field_concept_id ); /************************ Standardized health system data ************************/ ALTER TABLE ohdsi.location ADD CONSTRAINT xpk_location PRIMARY KEY ( location_id ) ; ALTER TABLE ohdsi.location_history ADD CONSTRAINT xpk_location_history PRIMARY KEY ( location_history_id ) ; -- May need to remove this one ALTER TABLE ohdsi.care_site ADD CONSTRAINT xpk_care_site PRIMARY KEY ( care_site_id ) ; ALTER TABLE ohdsi.provider ADD CONSTRAINT xpk_provider PRIMARY KEY ( provider_id ) ; /************************ Standardized health economics ************************/ ALTER TABLE ohdsi.payer_plan_period ADD CONSTRAINT xpk_payer_plan_period PRIMARY KEY ( payer_plan_period_id ) ; ALTER TABLE ohdsi.cost ADD CONSTRAINT xpk_visit_cost PRIMARY KEY ( cost_id ) ; /************************ Standardized derived elements ************************/ ALTER TABLE ohdsi.cohort ADD CONSTRAINT xpk_cohort PRIMARY KEY ( cohort_definition_id, subject_id, cohort_start_date, cohort_end_date ) ; ALTER TABLE ohdsi.cohort_attribute ADD CONSTRAINT xpk_cohort_attribute PRIMARY KEY ( cohort_definition_id, subject_id, cohort_start_date, cohort_end_date, attribute_definition_id ) ; ALTER TABLE ohdsi.drug_era ADD CONSTRAINT xpk_drug_era PRIMARY KEY ( drug_era_id ) ; ALTER TABLE ohdsi.dose_era ADD CONSTRAINT xpk_dose_era PRIMARY KEY ( dose_era_id ) ; ALTER TABLE ohdsi.condition_era ADD CONSTRAINT xpk_condition_era PRIMARY KEY ( condition_era_id ) ;