--postgresql CDM DDL Specification for OMOP Common Data Model v6_0 --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.PERSON ( person_id bigint NOT NULL, gender_concept_id integer NOT NULL, year_of_birth integer NOT NULL, month_of_birth integer NULL, day_of_birth integer NULL, birth_datetime TIMESTAMP NULL, death_datetime TIMESTAMP NULL, race_concept_id integer NOT NULL, ethnicity_concept_id integer NOT NULL, location_id bigint NULL, provider_id bigint NULL, care_site_id bigint NULL, person_source_value varchar(50) NULL, gender_source_value varchar(50) NULL, gender_source_concept_id integer NOT NULL, race_source_value varchar(50) NULL, race_source_concept_id integer NOT NULL, ethnicity_source_value varchar(50) NULL, ethnicity_source_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.OBSERVATION_PERIOD ( observation_period_id bigint NOT NULL, person_id bigint NOT NULL, observation_period_start_date date NOT NULL, observation_period_end_date date NOT NULL, period_type_concept_id Integer NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.VISIT_OCCURRENCE ( visit_occurrence_id bigint NOT NULL, person_id bigint NOT NULL, visit_concept_id integer NOT NULL, visit_start_date date NULL, visit_start_datetime TIMESTAMP NOT NULL, visit_end_date date NULL, visit_end_datetime TIMESTAMP NOT NULL, visit_type_concept_id Integer NOT NULL, provider_id bigint NULL, care_site_id bigint NULL, visit_source_value varchar(50) NULL, visit_source_concept_id integer NOT NULL, admitted_from_concept_id integer NOT NULL, admitted_from_source_value varchar(50) NULL, discharge_to_concept_id integer NOT NULL, discharge_to_source_value varchar(50) NULL, preceding_visit_occurrence_id bigint NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.VISIT_DETAIL ( visit_detail_id bigint NOT NULL, person_id bigint NOT NULL, visit_detail_concept_id integer NOT NULL, visit_detail_start_date date NOT NULL, visit_detail_start_datetime TIMESTAMP NULL, visit_detail_end_date date NOT NULL, visit_detail_end_datetime TIMESTAMP NULL, visit_detail_type_concept_id Integer NOT NULL, provider_id bigint NULL, care_site_id bigint NULL, visit_detail_source_value varchar(50) NULL, visit_detail_source_concept_id integer NOT NULL, admitting_source_value varchar(50) NULL, admitting_source_concept_id integer NOT NULL, discharge_to_source_value varchar(50) NULL, discharge_to_concept_id integer NOT NULL, preceding_visit_detail_id bigint NULL, visit_detail_parent_id bigint NULL, visit_occurrence_id bigint NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.CONDITION_OCCURRENCE ( condition_occurrence_id bigint NOT NULL, person_id bigint NOT NULL, condition_concept_id integer NOT NULL, condition_start_date date NOT NULL, condition_start_datetime TIMESTAMP NULL, condition_end_date date NULL, condition_end_datetime TIMESTAMP NULL, condition_type_concept_id integer NOT NULL, condition_status_concept_id integer NOT NULL, stop_reason varchar(20) NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, condition_source_value varchar(50) NULL, condition_source_concept_id integer NOT NULL, condition_status_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.DRUG_EXPOSURE ( drug_exposure_id bigint NOT NULL, person_id bigint NOT NULL, drug_concept_id integer NOT NULL, drug_exposure_start_date date NOT NULL, drug_exposure_start_datetime TIMESTAMP NULL, drug_exposure_end_date date NOT NULL, drug_exposure_end_datetime TIMESTAMP NULL, verbatim_end_date date NULL, drug_type_concept_id integer NOT NULL, stop_reason varchar(20) NULL, refills integer NULL, quantity NUMERIC NULL, days_supply integer NULL, sig TEXT NULL, route_concept_id integer NULL, lot_number varchar(50) NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, drug_source_value varchar(50) NULL, drug_source_concept_id integer NOT NULL, route_source_value varchar(50) NULL, dose_unit_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.PROCEDURE_OCCURRENCE ( procedure_occurrence_id bigint NOT NULL, person_id bigint NOT NULL, procedure_concept_id integer NOT NULL, procedure_date date NULL, procedure_datetime TIMESTAMP NOT NULL, procedure_type_concept_id integer NOT NULL, modifier_concept_id integer NOT NULL, quantity integer NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, procedure_source_value varchar(50) NULL, procedure_source_concept_id integer NOT NULL, modifier_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.DEVICE_EXPOSURE ( device_exposure_id bigint NOT NULL, person_id bigint NOT NULL, device_concept_id integer NOT NULL, device_exposure_start_date date NOT NULL, device_exposure_start_datetime TIMESTAMP NULL, device_exposure_end_date date NULL, device_exposure_end_datetime TIMESTAMP NULL, device_type_concept_id integer NOT NULL, unique_device_id varchar(50) NULL, quantity integer NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, device_source_value varchar(50) NULL, device_source_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.MEASUREMENT ( measurement_id bigint NOT NULL, person_id bigint NOT NULL, measurement_concept_id integer NOT NULL, measurement_date date NOT NULL, measurement_datetime TIMESTAMP NULL, measurement_time varchar(10) NULL, measurement_type_concept_id integer NOT NULL, operator_concept_id integer NULL, value_as_number NUMERIC NULL, value_as_concept_id integer NULL, unit_concept_id integer NULL, range_low NUMERIC NULL, range_high NUMERIC NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, measurement_source_value varchar(50) NULL, measurement_source_concept_id integer NOT NULL, unit_source_value varchar(50) NULL, value_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.OBSERVATION ( observation_id bigint NOT NULL, person_id bigint NOT NULL, observation_concept_id integer NOT NULL, observation_date date NULL, observation_datetime TIMESTAMP NOT NULL, observation_type_concept_id integer NOT NULL, value_as_number NUMERIC NULL, value_as_string varchar(60) NULL, value_as_concept_id Integer NULL, qualifier_concept_id integer NULL, unit_concept_id integer NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, observation_source_value varchar(50) NULL, observation_source_concept_id integer NOT NULL, unit_source_value varchar(50) NULL, qualifier_source_value varchar(50) NULL, observation_event_id bigint NULL, obs_event_field_concept_id integer NULL, value_as_datetime TIMESTAMP NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.NOTE ( note_id integer NOT NULL, person_id bigint NOT NULL, note_date date NOT NULL, note_datetime TIMESTAMP NULL, note_type_concept_id integer NOT NULL, note_class_concept_id integer NOT NULL, note_title varchar(250) NULL, note_text TEXT NOT NULL, encoding_concept_id integer NOT NULL, language_concept_id integer NOT NULL, provider_id bigint NULL, visit_occurrence_id bigint NULL, visit_detail_id bigint NULL, note_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.NOTE_NLP ( note_nlp_id bigint NOT NULL, note_id integer NOT NULL, section_concept_id integer NULL, snippet varchar(250) NULL, "offset" varchar(50) NULL, lexical_variant varchar(250) NOT NULL, note_nlp_concept_id integer NULL, note_nlp_source_concept_id integer NULL, nlp_system varchar(250) NULL, nlp_date date NOT NULL, nlp_datetime TIMESTAMP NULL, term_exists varchar(1) NULL, term_temporal varchar(50) NULL, term_modifiers varchar(2000) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.SPECIMEN ( specimen_id bigint NOT NULL, person_id bigint NOT NULL, specimen_concept_id integer NOT NULL, specimen_type_concept_id integer NOT NULL, specimen_date date NOT NULL, specimen_datetime TIMESTAMP NULL, quantity NUMERIC NULL, unit_concept_id integer NULL, anatomic_site_concept_id integer NULL, disease_status_concept_id integer NULL, specimen_source_id varchar(50) NULL, specimen_source_value varchar(50) NULL, unit_source_value varchar(50) NULL, anatomic_site_source_value varchar(50) NULL, disease_status_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.FACT_RELATIONSHIP ( domain_concept_id_1 integer NOT NULL, fact_id_1 bigint NOT NULL, domain_concept_id_2 integer NOT NULL, fact_id_2 bigint NOT NULL, relationship_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.SURVEY_CONDUCT ( survey_conduct_id bigint NOT NULL, person_id bigint NOT NULL, survey_concept_id integer NOT NULL, survey_start_date date NULL, survey_start_datetime TIMESTAMP NULL, survey_end_date date NULL, survey_end_datetime TIMESTAMP NOT NULL, provider_id bigint NULL, assisted_concept_id integer NOT NULL, respondent_type_concept_id integer NOT NULL, timing_concept_id integer NOT NULL, collection_method_concept_id integer NOT NULL, assisted_source_value varchar(50) NULL, respondent_type_source_value varchar(100) NULL, timing_source_value varchar(100) NULL, collection_method_source_value varchar(100) NULL, survey_source_value varchar(100) NULL, survey_source_concept_id integer NOT NULL, survey_source_identifier varchar(100) NULL, validated_survey_concept_id integer NOT NULL, validated_survey_source_value integer NULL, survey_version_number varchar(20) NULL, visit_occurrence_id bigint NULL, response_visit_occurrence_id bigint NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.LOCATION ( location_id bigint NOT NULL, address_1 varchar(50) NULL, address_2 varchar(50) NULL, city varchar(50) NULL, state varchar(2) NULL, zip varchar(9) NULL, county varchar(20) NULL, location_source_value varchar(50) NULL, latitude NUMERIC NULL, longitude NUMERIC NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.LOCATION_HISTORY ( location_id bigint NOT NULL, relationship_type_concept_id integer NOT NULL, domain_id varchar(50) NOT NULL, entity_id bigint NOT NULL, start_date date NOT NULL, end_date date NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CARE_SITE ( care_site_id bigint NOT NULL, care_site_name varchar(255) NULL, place_of_service_concept_id integer NOT NULL, location_id bigint NULL, care_site_source_value varchar(50) NULL, place_of_service_source_value varchar(50) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.PROVIDER ( provider_id bigint NOT NULL, provider_name varchar(255) NULL, npi varchar(20) NULL, dea varchar(20) NULL, specialty_concept_id integer NOT NULL, care_site_id bigint NULL, year_of_birth integer NULL, gender_concept_id integer NOT NULL, provider_source_value varchar(50) NULL, specialty_source_value varchar(50) NULL, specialty_source_concept_id integer NOT NULL, gender_source_value varchar(50) NULL, gender_source_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.PAYER_PLAN_PERIOD ( payer_plan_period_id bigint NOT NULL, person_id bigint NOT NULL, contract_person_id bigint NULL, payer_plan_period_start_date date NOT NULL, payer_plan_period_end_date date NOT NULL, payer_concept_id integer NOT NULL, payer_source_value varchar(50) NULL, payer_source_concept_id integer NOT NULL, plan_concept_id integer NOT NULL, plan_source_value varchar(50) NULL, plan_source_concept_id integer NOT NULL, contract_concept_id integer NOT NULL, contract_source_value varchar(50) NOT NULL, contract_source_concept_id integer NOT NULL, sponsor_concept_id integer NOT NULL, sponsor_source_value varchar(50) NULL, sponsor_source_concept_id integer NULL, family_source_value varchar(50) NULL, stop_reason_concept_id integer NULL, stop_reason_source_value varchar(50) NULL, stop_reason_source_concept_id integer NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.COST ( cost_id INTEGER NOT NULL, cost_event_id bigint NOT NULL, cost_domain_id VARCHAR(20) NOT NULL, cost_type_concept_id integer NOT NULL, currency_concept_id integer NULL, total_charge NUMERIC NULL, total_cost NUMERIC NULL, total_paid NUMERIC NULL, paid_by_payer NUMERIC NULL, paid_by_patient NUMERIC NULL, paid_patient_copay NUMERIC NULL, paid_patient_coinsurance NUMERIC NULL, paid_patient_deductible NUMERIC NULL, paid_by_primary NUMERIC NULL, paid_ingredient_cost NUMERIC NULL, paid_dispensing_fee NUMERIC NULL, payer_plan_period_id bigint NULL, amount_allowed NUMERIC NULL, revenue_code_concept_id integer NULL, revenue_code_source_value VARCHAR(50) NULL, drg_concept_id integer NULL, drg_source_value VARCHAR(3) NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.DRUG_ERA ( drug_era_id bigint NOT NULL, person_id bigint NOT NULL, drug_concept_id integer NOT NULL, drug_era_start_date TIMESTAMP NOT NULL, drug_era_end_date TIMESTAMP NOT NULL, drug_exposure_count integer NULL, gap_days integer NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.DOSE_ERA ( dose_era_id bigint NOT NULL, person_id bigint NOT NULL, drug_concept_id integer NOT NULL, unit_concept_id integer NOT NULL, dose_value NUMERIC NOT NULL, dose_era_start_date TIMESTAMP NOT NULL, dose_era_end_date TIMESTAMP NOT NULL ); --HINT DISTRIBUTE ON KEY (person_id) CREATE TABLE ohdsi.CONDITION_ERA ( condition_era_id integer NOT NULL, person_id bigint NOT NULL, condition_concept_id integer NOT NULL, condition_era_start_date TIMESTAMP NOT NULL, condition_era_end_date TIMESTAMP NOT NULL, condition_occurrence_count integer NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.METADATA ( metadata_concept_id integer NOT NULL, metadata_type_concept_id integer NOT NULL, name varchar(250) NOT NULL, value_as_string varchar(250) NULL, value_as_concept_id integer NULL, metadata_date date NULL, metadata_datetime TIMESTAMP NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CDM_SOURCE ( cdm_source_name varchar(255) NOT NULL, cdm_source_abbreviation varchar(25) NULL, cdm_holder varchar(255) NULL, source_description TEXT NULL, source_documentation_reference varchar(255) NULL, cdm_etl_reference varchar(255) NULL, source_release_date date NULL, cdm_release_date date NULL, cdm_version varchar(10) NULL, vocabulary_version varchar(20) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CONCEPT ( concept_id integer NOT NULL, concept_name varchar(255) NOT NULL, domain_id varchar(20) NOT NULL, vocabulary_id varchar(20) NOT NULL, concept_class_id varchar(20) NOT NULL, standard_concept varchar(1) NULL, concept_code varchar(50) NOT NULL, valid_start_date date NOT NULL, valid_end_date date NOT NULL, invalid_reason varchar(1) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.VOCABULARY ( vocabulary_id varchar(20) NOT NULL, vocabulary_name varchar(255) NOT NULL, vocabulary_reference varchar(255) NOT NULL, vocabulary_version varchar(255) NULL, vocabulary_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.DOMAIN ( domain_id varchar(20) NOT NULL, domain_name varchar(255) NOT NULL, domain_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CONCEPT_CLASS ( concept_class_id varchar(20) NOT NULL, concept_class_name varchar(255) NOT NULL, concept_class_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CONCEPT_RELATIONSHIP ( concept_id_1 integer NOT NULL, concept_id_2 integer NOT NULL, relationship_id varchar(20) NOT NULL, valid_start_date date NOT NULL, valid_end_date date NOT NULL, invalid_reason varchar(1) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.RELATIONSHIP ( relationship_id varchar(20) NOT NULL, relationship_name varchar(255) NOT NULL, is_hierarchical varchar(1) NOT NULL, defines_ancestry varchar(1) NOT NULL, reverse_relationship_id varchar(20) NOT NULL, relationship_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CONCEPT_SYNONYM ( concept_id integer NOT NULL, concept_synonym_name varchar(1000) NOT NULL, language_concept_id integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.CONCEPT_ANCESTOR ( ancestor_concept_id integer NOT NULL, descendant_concept_id integer NOT NULL, min_levels_of_separation integer NOT NULL, max_levels_of_separation integer NOT NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.SOURCE_TO_CONCEPT_MAP ( source_code varchar(50) NOT NULL, source_concept_id integer NOT NULL, source_vocabulary_id varchar(20) NOT NULL, source_code_description varchar(255) NULL, target_concept_id integer NOT NULL, target_vocabulary_id varchar(20) NOT NULL, valid_start_date date NOT NULL, valid_end_date date NOT NULL, invalid_reason varchar(1) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.DRUG_STRENGTH ( drug_concept_id integer NOT NULL, ingredient_concept_id integer NOT NULL, amount_value NUMERIC NULL, amount_unit_concept_id integer NULL, numerator_value NUMERIC NULL, numerator_unit_concept_id integer NULL, denominator_value NUMERIC NULL, denominator_unit_concept_id integer NULL, box_size integer NULL, valid_start_date date NOT NULL, valid_end_date date NOT NULL, invalid_reason varchar(1) NULL ); --HINT DISTRIBUTE ON RANDOM CREATE TABLE ohdsi.COHORT_DEFINITION ( cohort_definition_id integer NOT NULL, cohort_definition_name varchar(255) NOT NULL, cohort_definition_description TEXT NULL, definition_type_concept_id integer NOT NULL, cohort_definition_syntax TEXT NULL, subject_concept_id integer NOT NULL, cohort_initiation_date date NULL );