# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions on: push: branches: - '**' pull_request: branches: - '**' name: R-CMD-check jobs: R-CMD-check: runs-on: ${{ matrix.config.os }} name: ${{ matrix.config.os }} (${{ matrix.config.r }}) strategy: # Test create and drop tables in a database so they cannot be executed in parallel max-parallel: 1 fail-fast: false matrix: config: - {os: macOS-latest, r: 'release'} # - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} # - {os: windows-latest, r: 'release'} # Does not appear to have Java 32-bit, hence the --no-multiarch env: R_REMOTES_NO_ERRORS_FROM_WARNINGS: true RSPM: ${{ matrix.config.rspm }} CDMDDLBASE_POSTGRESQL_USER: ${{ secrets.CDMDDLBASE_POSTGRESQL_USER }} CDMDDLBASE_POSTGRESQL_PASSWORD: ${{ secrets.CDMDDLBASE_POSTGRESQL_PASSWORD }} CDMDDLBASE_POSTGRESQL_SERVER: ${{ secrets.CDMDDLBASE_POSTGRESQL_SERVER }} CDMDDLBASE_POSTGRESQL_SCHEMA: ${{ secrets.CDMDDLBASE_POSTGRESQL_SCHEMA }} CDMDDLBASE_REDSHIFT_USER: ${{ secrets.CDMDDLBASE_REDSHIFT_USER }} CDMDDLBASE_REDSHIFT_PASSWORD: ${{ secrets.CDMDDLBASE_REDSHIFT_PASSWORD }} CDMDDLBASE_REDSHIFT_SERVER: ${{ secrets.CDMDDLBASE_REDSHIFT_SERVER }} CDMDDLBASE_REDSHIFT_SCHEMA: ${{ secrets.CDMDDLBASE_REDSHIFT_SCHEMA }} CDMDDLBASE_SQL_SERVER_USER: ${{ secrets.CDMDDLBASE_SQL_SERVER_USER }} CDMDDLBASE_SQL_SERVER_PASSWORD: ${{ secrets.CDMDDLBASE_SQL_SERVER_PASSWORD }} CDMDDLBASE_SQL_SERVER_SERVER: ${{ secrets.CDMDDLBASE_SQL_SERVER_SERVER }} CDMDDLBASE_SQL_SERVER_CDM_SCHEMA: ${{ secrets.CDMDDLBASE_SQL_SERVER_CDM_SCHEMA }} CDMDDLBASE_ORACLE_USER: ${{ secrets.CDMDDLBASE_ORACLE_USER }} CDMDDLBASE_ORACLE_PASSWORD: ${{ secrets.CDMDDLBASE_ORACLE_PASSWORD }} CDMDDLBASE_ORACLE_SERVER: ${{ secrets.CDMDDLBASE_ORACLE_SERVER }} CDMDDLBASE_ORACLE_CDM_SCHEMA: ${{ secrets.CDMDDLBASE_ORACLE_CDM_SCHEMA }} steps: - uses: actions/checkout@v2 - uses: r-lib/actions/setup-r@v1 with: r-version: ${{ matrix.config.r }} - uses: r-lib/actions/setup-tinytex@v1 - uses: r-lib/actions/setup-pandoc@v1 - name: Query dependencies run: | install.packages('remotes') saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") shell: Rscript {0} - name: Cache R packages if: runner.os != 'Windows' uses: actions/cache@v2 with: path: ${{ env.R_LIBS_USER }} key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - name: Install system dependencies if: runner.os == 'Linux' run: | while read -r cmd do eval sudo $cmd done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') - name: Install libssh if: runner.os == 'Linux' run: | sudo apt-get install libssh-dev - name: Install dependencies run: | remotes::install_deps(dependencies = TRUE, INSTALL_opts=c("--no-multiarch")) remotes::install_cran("rcmdcheck") shell: Rscript {0} - name: Install covr if: runner.os == 'macOS' run: | remotes::install_cran("covr") shell: Rscript {0} - name: Remove check folder if exists if: runner.os == 'macOS' run: unlink("check", recursive = TRUE) shell: Rscript {0} - name: Check env: _R_CHECK_CRAN_INCOMING_REMOTE_: false run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch"), error_on = "warning", check_dir = "check") shell: Rscript {0} - name: Upload check results if: failure() uses: actions/upload-artifact@v2 with: name: ${{ runner.os }}-r${{ matrix.config.r }}-results path: check - name: Upload source package if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master' uses: actions/upload-artifact@v2 with: name: package_tarball path: check/*.tar.gz - name: Test coverage if: runner.os == 'macOS' run: covr::codecov() shell: Rscript {0}