47 lines
1.7 KiB
R
47 lines
1.7 KiB
R
#This script is meant to create the OMOP Common Data Model DDLs for each dialect as well as the pdf of the documentation.
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# Step 1: Update the file inst/sql/sql_server/OMOP CDM ddl.sql with the changes for the new version and set the below variables
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# Step 1.1: The version of the CDM you are writing. This will be used for the name of the pdf so, for example, write v5.3 as v5_3
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cdmVersion <- "v5_3"
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# Step 1.2: The location of the wiki markdown files. The default is "../../Documentation/CommonDataModel_Wiki_Files"
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mdFilesLocation <- "../../Documentation/CommonDataModel_Wiki_Files"
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# Step 2: Run the following code to create the DDLs for each dialect:
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writeDDL("bigquery")
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writeDDL("impala")
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writeDDL("netezza")
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writeDDL("oracle")
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writeDDL("pdw")
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writeDDL("postgresql")
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writeDDL("redshift")
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writeDDL("sql server")
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# Step 3: Run the following code to create the primary key constraints and index files for Oracle, Postgres, PDW and Sql Server
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writeIndex("oracle")
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writeIndex("postgresql")
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writeIndex("pdw")
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writeIndex("sql server")
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# Step 4: Run the following code to create primary key constraints for Netezza
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writePrimaryKeys("netezza")
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# Step 5: Run the following code to create foreign key constraints for Oracle, Postgres, PDW and Sql Server
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writeConstraints("oracle")
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writeConstraints("postgresql")
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writeConstraints("pdw")
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writeConstraints("sql server")
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# step 6: Run the following code to create the pdf documentation. It will be written to the reports folder.
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rmarkdown::render("reports/OMOP_CDM_PDF.Rmd",
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output_format = "pdf_document",
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output_file = paste0("OMOP_CDM_",cdmVersion,".pdf"),
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params = list(mdFilesLocation = mdFilesLocation))
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