53 lines
1.9 KiB
R
53 lines
1.9 KiB
R
# This script is meant to create the OMOP Common Data Model DDLs for each dialect as well as the pdf of the documentation.
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# For a given cdmVersion, create all ddl sql files for every sql dialect
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# Results are written to inst/ddl/cdm_version/dialect.
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cdmVersion <- "5.3"
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supportedVersions <- CommonDataModel::listSupportedVersions()
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for (cdmVersion in supportedVersions) {
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for (targetDialect in CommonDataModel::listSupportedDialects()) {
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CommonDataModel::writeDdl(targetDialect = targetDialect,
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cdmVersion = cdmVersion)
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CommonDataModel::writePrimaryKeys(targetDialect = targetDialect,
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cdmVersion = cdmVersion)
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CommonDataModel::writeForeignKeys(targetDialect = targetDialect,
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cdmVersion = cdmVersion)
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CommonDataModel::writeIndex(targetDialect = targetDialect,
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cdmVersion = cdmVersion)
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}
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}
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CommonDataModel::buildRelease("5.3")
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#############
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# Zipping release
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# All dialects
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CommonDataModel::buildReleaseZip(cdmVersion="5.3", outputfolder="output")
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buildReleaseZip()
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# One dialect
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buildReleaseZip(cdmVersion="5.4", targetDialect="postgresql", outputfolder="output")
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#############
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# BE SURE TO RUN THE EXTRAS/SITEMAINTENANCE.R BEFORE CREATING THE PDF
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# step 9: Run the following code to create the pdf documentation. It will be written to the reports folder. Use knit with pagedown
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pagedown::chrome_print("cdm54.Rmd") # create a comprehensive rmd with background, conventions, etc like https://stackoverflow.com/questions/25824795/how-to-combine-two-rmarkdown-rmd-files-into-a-single-output
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# Step 10: After updating any of the .Rmd files, rendering the site following directions in SiteMaintenance.R, then move the files to the CommonDataModel directory
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newdir <- "C:/Git/Github/CommonDataModel/docs"
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currentdir <- paste0(getwd(),"/docs/")
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file.copy(currentdir, newdir, recursive = TRUE, overwrite = TRUE)
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