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OMOP Common Data Model by OHDSI
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Merge pull request #183 from keithm-thompson/master 
Fix VISIT_DETAIL documentation to reflect correct 'required' and 'type' values for multiple columns
 		2018-06-13 10:23:22 -04:00
BigQuery removed null statements when creating bigquery tables 2018-03-19 17:03:02 -04:00
CodeExcerpts Query for mapping to standard vocabularies 2017-12-08 12:16:27 -05:00
Documentation/CommonDataModel_Wiki_Files Merge branch 'master' into master 2018-06-13 10:22:56 -04:00
Impala Fixes issue #173. The proper way to allow reserve words in Impala is to use back ticks. 2018-04-10 13:14:41 -04:00
Netezza closes #140, #144, #135 2018-02-07 15:25:57 -05:00
Oracle Merge pull request #148 from OHDSI/cdm_V5.3.-bugfix.1 2018-02-07 19:27:27 -05:00
ParallelDataWarehouse Merge branch 'master' into cdm_v5.3.-bugfix.2 2018-02-07 19:54:09 -05:00
PostgreSQL Fix in postgres readme 2018-05-02 14:54:25 +02:00
Redshift Merge branch 'master' into cdm_v5.3.-bugfix.2 2018-02-07 19:54:09 -05:00
Sql Server Closes #171 - changes datetime formats in sql server DDL to datetime2 2018-05-11 15:03:53 -04:00
.gitignore Addresses #64, #70, #79, #92, #120, #132, #131 in code, documentation is still being updated to reflect these changes. 2017-11-09 09:30:50 -05:00
LICENSE Initial commit 2014-10-14 16:20:22 -04:00
OMOP_CDM_v5_3.csv Adding CSV file representation of CDM 2018-03-21 09:30:53 +01:00
OMOP_CDM_v5_3.pdf Final cdm v5.3 addition, moved new DDLs to correct locations 2018-01-03 14:56:42 -05:00
README.md Typo fix 2018-01-03 15:14:12 -05:00

README.md

Common Data Model v5.3

See full CDM specification file on our github wiki or in the CDM V5.3 PDF

Release Notes for v5.3

This version is based on the pull requests and CDM proposals:

  • #64 This removes the datetime fields from OBSERVATION_PERIOD
  • #70 Adds the VISIT_DETAIL table
  • #79 Adds the METADATA table
  • #92 Fixes qualifier typo in PROCEDURE_OCCURRENCE
  • #120 Adds the following fields to PAYER_PLAN_PERIOD:
    • PAYER_CONCEPT_ID
    • PAYER_SOURCE_CONCEPT_ID
    • PLAN_CONCEPT_ID
    • PLAN_SOURCE_CONCEPT_ID
    • SPONSOR_CONCEPT_ID
    • SPONSOR_SOURCE_CONCEPT_ID
    • STOP_REASON_CONCEPT_ID
    • STOP_REASON_SOURCE_VALUE
    • STOP_REASON_SOURCE_CONCEPT_ID

Additional Updates

  • There is a development branch now available with the DDLs and documentation for tables and/or changes that have been accepted into a future version of the CDM. Please use these with caution as they are subject to change upon formal release
  • BigQuery, Netezza, and Parallel Data Warehouse DDLs are now available

This repo contains the definition of the OMOP Common Data Model. It supports the SQL technologies: BigQuery, Impala, Netezza, Oracle, Parallel Data Warehouse, Postgres, Redshift, and SQL Server. For each, the DDL, constraints and indexes (if appropriate) are defined.

Versions are defined using tagging and versioning. Full versions (V6, 7 etc.) are usually released each year (1-Jan) and are not backwards compatible. Minor versions (V5.1, 5.2 etc.) are not guaranteed to be backwards compatible though an effort is made to make sure that current queries will not break. Micro versions (V5.1.1, V5.1.2 etc.) are released irregularly and often, and contain small hot fixes or backward compatible changes to the last minor version.