143 lines
4.0 KiB
SQL
143 lines
4.0 KiB
SQL
/*********************************************************************************
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# Copyright 2014 Observational Health Data Sciences and Informatics
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#
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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********************************************************************************/
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/************************
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####### # # ####### ###### ##### ###### # # #######
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# # ## ## # # # # # # # # ## ## # # #
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# # # # # # # # # # # # # # # # # # # #
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# # # # # # # ###### # # # # # # # # ######
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# # # # # # # # # # # # # # #
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# # # # # # # # # # # # # # # # #
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####### # # ####### # ##### ###### # # ## #####
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Script to load the common data model, version 5.0 vocabulary tables for SQL Server database
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Notes
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1) There is no data file load for the SOURCE_TO_CONCEPT_MAP table because that table is deprecated in CDM version 5.0
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2) This script assumes the CDM version 5 vocabulary zip file has been unzipped into the "C:\CDMV5Vocabulary" directory.
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3) If you unzipped your CDM version 5 vocabulary files into a different directory then replace all file paths below, with your directory path.
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4) Run this SQL query script in the database where you created your CDM Version 5 tables
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last revised: 26 Nov 2014
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author: Lee Evans
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*************************/
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TRUNCATE TABLE DRUG_STRENGTH;
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BULK INSERT DRUG_STRENGTH
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FROM 'C:\CDMV5VOCAB\DRUG_STRENGTH.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\DRUG_STRENGTH.bad',
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TABLOCK
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);
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TRUNCATE TABLE CONCEPT;
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BULK INSERT CONCEPT
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FROM 'C:\CDMV5VOCAB\CONCEPT.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\CONCEPT.bad',
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TABLOCK
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);
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TRUNCATE TABLE CONCEPT_RELATIONSHIP;
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BULK INSERT CONCEPT_RELATIONSHIP
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FROM 'C:\CDMV5VOCAB\CONCEPT_RELATIONSHIP.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\CONCEPT_RELATIONSHIP.bad',
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TABLOCK
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);
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TRUNCATE TABLE CONCEPT_ANCESTOR;
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BULK INSERT CONCEPT_ANCESTOR
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FROM 'C:\CDMV5VOCAB\CONCEPT_ANCESTOR.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\CONCEPT_ANCESTOR.bad',
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TABLOCK
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);
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TRUNCATE TABLE CONCEPT_SYNONYM;
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BULK INSERT CONCEPT_SYNONYM
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FROM 'C:\CDMV5VOCAB\CONCEPT_SYNONYM.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\CONCEPT_SYNONYM.bad',
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TABLOCK
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);
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TRUNCATE TABLE VOCABULARY;
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BULK INSERT VOCABULARY
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FROM 'C:\CDMV5VOCAB\VOCABULARY.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\VOCABULARY.bad',
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TABLOCK
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);
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TRUNCATE TABLE RELATIONSHIP;
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BULK INSERT RELATIONSHIP
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FROM 'C:\CDMV5VOCAB\RELATIONSHIP.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\RELATIONSHIP.bad',
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TABLOCK
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);
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TRUNCATE TABLE CONCEPT_CLASS;
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BULK INSERT CONCEPT_CLASS
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FROM 'C:\CDMV5VOCAB\CONCEPT_CLASS.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\CONCEPT_CLASS.bad',
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TABLOCK
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);
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TRUNCATE TABLE DOMAIN;
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BULK INSERT DOMAIN
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FROM 'C:\CDMV5VOCAB\DOMAIN.csv'
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WITH (
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FIRSTROW = 2,
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FIELDTERMINATOR = '\t',
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ROWTERMINATOR = '0x0a',
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ERRORFILE = 'C:\CDMV5VOCAB\DOMAIN.bad',
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TABLOCK
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);
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