173 lines
7.1 KiB
SQL
173 lines
7.1 KiB
SQL
/*********************************************************************************
|
|
# Copyright 2014 Observational Health Data Sciences and Informatics
|
|
#
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
********************************************************************************/
|
|
|
|
/************************
|
|
|
|
####### # # ####### ###### ##### ###### # # ####### ##### ###
|
|
# # ## ## # # # # # # # # ## ## # # # # # # # # ##### ###### # # ###### ####
|
|
# # # # # # # # # # # # # # # # # # # # # # ## # # # # # # # #
|
|
# # # # # # # ###### # # # # # # # # ###### ##### # # # # # # ##### ## ##### ####
|
|
# # # # # # # # # # # # # # # ### # # # # # # # # ## # #
|
|
# # # # # # # # # # # # # # # # # ### # # # ## # # # # # # # #
|
|
####### # # ####### # ##### ###### # # ## ##### ### ####### ### # # ##### ###### # # ###### ####
|
|
|
|
|
|
script to create the required indexes within OMOP common data model, version 5.2 for Oracle database
|
|
|
|
last revised: 17 July 2017
|
|
|
|
author: Patrick Ryan
|
|
|
|
description: These indices are considered a minimal requirement to ensure adequate performance of analyses.
|
|
|
|
*************************/
|
|
|
|
|
|
/************************
|
|
|
|
Standardized vocabulary
|
|
|
|
************************/
|
|
|
|
CREATE INDEX idx_concept_code ON concept (concept_code ASC);
|
|
CREATE INDEX idx_concept_vocabluary_id ON concept (vocabulary_id ASC);
|
|
CREATE INDEX idx_concept_domain_id ON concept (domain_id ASC);
|
|
CREATE INDEX idx_concept_class_id ON concept (concept_class_id ASC);
|
|
|
|
CREATE INDEX idx_concept_relationship_id_1 ON concept_relationship (concept_id_1 ASC);
|
|
CREATE INDEX idx_concept_relationship_id_2 ON concept_relationship (concept_id_2 ASC);
|
|
CREATE INDEX idx_concept_relationship_id_3 ON concept_relationship (relationship_id ASC);
|
|
|
|
CREATE INDEX idx_concept_synonym_id ON concept_synonym (concept_id ASC);
|
|
|
|
CREATE INDEX idx_concept_ancestor_id_1 ON concept_ancestor (ancestor_concept_id ASC);
|
|
CREATE INDEX idx_concept_ancestor_id_2 ON concept_ancestor (descendant_concept_id ASC);
|
|
|
|
CREATE INDEX idx_source_to_concept_map_id_3 ON source_to_concept_map (target_concept_id ASC);
|
|
CREATE INDEX idx_source_to_concept_map_id_1 ON source_to_concept_map (source_vocabulary_id ASC);
|
|
CREATE INDEX idx_source_to_concept_map_id_2 ON source_to_concept_map (target_vocabulary_id ASC);
|
|
CREATE INDEX idx_source_to_concept_map_code ON source_to_concept_map (source_code ASC);
|
|
|
|
CREATE INDEX idx_drug_strength_id_1 ON drug_strength (drug_concept_id ASC);
|
|
CREATE INDEX idx_drug_strength_id_2 ON drug_strength (ingredient_concept_id ASC);
|
|
|
|
/**************************
|
|
|
|
Standardized meta-data
|
|
|
|
***************************/
|
|
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized clinical data
|
|
|
|
************************/
|
|
|
|
CREATE INDEX idx_observation_period_id ON observation_period (person_id ASC);
|
|
|
|
CREATE INDEX idx_specimen_person_id ON specimen (person_id ASC);
|
|
CREATE INDEX idx_specimen_concept_id ON specimen (specimen_concept_id ASC);
|
|
|
|
CREATE INDEX idx_visit_person_id ON visit_occurrence (person_id ASC);
|
|
CREATE INDEX idx_visit_concept_id ON visit_occurrence (visit_concept_id ASC);
|
|
|
|
CREATE INDEX idx_procedure_person_id ON procedure_occurrence (person_id ASC);
|
|
CREATE INDEX idx_procedure_concept_id ON procedure_occurrence (procedure_concept_id ASC);
|
|
CREATE INDEX idx_procedure_visit_id ON procedure_occurrence (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_drug_person_id ON drug_exposure (person_id ASC);
|
|
CREATE INDEX idx_drug_concept_id ON drug_exposure (drug_concept_id ASC);
|
|
CREATE INDEX idx_drug_visit_id ON drug_exposure (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_device_person_id ON device_exposure (person_id ASC);
|
|
CREATE INDEX idx_device_concept_id ON device_exposure (device_concept_id ASC);
|
|
CREATE INDEX idx_device_visit_id ON device_exposure (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_condition_person_id ON condition_occurrence (person_id ASC);
|
|
CREATE INDEX idx_condition_concept_id ON condition_occurrence (condition_concept_id ASC);
|
|
CREATE INDEX idx_condition_visit_id ON condition_occurrence (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_measurement_person_id ON measurement (person_id ASC);
|
|
CREATE INDEX idx_measurement_concept_id ON measurement (measurement_concept_id ASC);
|
|
CREATE INDEX idx_measurement_visit_id ON measurement (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_note_person_id ON note (person_id ASC);
|
|
CREATE INDEX idx_note_concept_id ON note (note_type_concept_id ASC);
|
|
CREATE INDEX idx_note_visit_id ON note (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_note_nlp_person_id ON note_nlp (person_id ASC);
|
|
CREATE INDEX idx_note_nlp_note_id ON note_nlp (note_id ASC);
|
|
CREATE INDEX idx_note_nlp_concept_id ON note_nlp (note_nlp_concept_id ASC);
|
|
|
|
CREATE INDEX idx_observation_person_id ON observation (person_id ASC);
|
|
CREATE INDEX idx_observation_concept_id ON observation (observation_concept_id ASC);
|
|
CREATE INDEX idx_observation_visit_id ON observation (visit_occurrence_id ASC);
|
|
|
|
CREATE INDEX idx_fact_relationship_id_1 ON fact_relationship (domain_concept_id_1 ASC);
|
|
CREATE INDEX idx_fact_relationship_id_2 ON fact_relationship (domain_concept_id_2 ASC);
|
|
CREATE INDEX idx_fact_relationship_id_3 ON fact_relationship (relationship_concept_id ASC);
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized health system data
|
|
|
|
************************/
|
|
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized health economics
|
|
|
|
************************/
|
|
|
|
CREATE INDEX idx_period_person_id ON payer_plan_period (person_id ASC);
|
|
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized derived elements
|
|
|
|
************************/
|
|
|
|
CREATE INDEX idx_cohort_subject_id ON cohort (subject_id ASC);
|
|
CREATE INDEX idx_cohort_c_definition_id ON cohort (cohort_definition_id ASC);
|
|
|
|
CREATE INDEX idx_ca_subject_id ON cohort_attribute (subject_id ASC);
|
|
CREATE INDEX idx_ca_definition_id ON cohort_attribute (cohort_definition_id ASC);
|
|
|
|
CREATE INDEX idx_drug_era_person_id ON drug_era (person_id ASC);
|
|
CREATE INDEX idx_drug_era_concept_id ON drug_era (drug_concept_id ASC);
|
|
|
|
CREATE INDEX idx_dose_era_person_id ON dose_era (person_id ASC);
|
|
CREATE INDEX idx_dose_era_concept_id ON dose_era (drug_concept_id ASC);
|
|
|
|
CREATE INDEX idx_condition_era_person_id ON condition_era (person_id ASC);
|
|
CREATE INDEX idx_condition_era_concept_id ON condition_era (condition_concept_id ASC);
|
|
|