751 lines
20 KiB
SQL
751 lines
20 KiB
SQL
/*********************************************************************************
|
|
# Copyright 2014-6 Observational Health Data Sciences and Informatics
|
|
#
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
********************************************************************************/
|
|
|
|
/************************
|
|
|
|
####### # # ####### ###### ##### ###### # # #######
|
|
# # ## ## # # # # # # # # ## ## # # #
|
|
# # # # # # # # # # # # # # # # # # # #
|
|
# # # # # # # ###### # # # # # # # # ######
|
|
# # # # # # # # # # # # # # #
|
|
# # # # # # # # # # # # # # # # #
|
|
####### # # ####### # ##### ###### # # ## #####
|
|
|
|
|
|
script to create OMOP common data model, version 5.0 for PostgreSQL database
|
|
|
|
last revised: 1-May-2016
|
|
|
|
Authors: Patrick Ryan, Christian Reich
|
|
|
|
|
|
*************************/
|
|
|
|
|
|
/************************
|
|
|
|
Standardized vocabulary
|
|
|
|
************************/
|
|
|
|
|
|
CREATE TABLE concept (
|
|
concept_id INTEGER NOT NULL,
|
|
concept_name VARCHAR(255) NOT NULL,
|
|
domain_id VARCHAR(20) NOT NULL,
|
|
vocabulary_id VARCHAR(20) NOT NULL,
|
|
concept_class_id VARCHAR(20) NOT NULL,
|
|
standard_concept VARCHAR(1) NULL,
|
|
concept_code VARCHAR(50) NOT NULL,
|
|
valid_start_date DATE NOT NULL,
|
|
valid_end_date DATE NOT NULL,
|
|
invalid_reason VARCHAR(1) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE vocabulary (
|
|
vocabulary_id VARCHAR(20) NOT NULL,
|
|
vocabulary_name VARCHAR(255) NOT NULL,
|
|
vocabulary_reference VARCHAR(255) NULL,
|
|
vocabulary_version VARCHAR(255) NULL,
|
|
vocabulary_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE domain (
|
|
domain_id VARCHAR(20) NOT NULL,
|
|
domain_name VARCHAR(255) NOT NULL,
|
|
domain_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE concept_class (
|
|
concept_class_id VARCHAR(20) NOT NULL,
|
|
concept_class_name VARCHAR(255) NOT NULL,
|
|
concept_class_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE concept_relationship (
|
|
concept_id_1 INTEGER NOT NULL,
|
|
concept_id_2 INTEGER NOT NULL,
|
|
relationship_id VARCHAR(20) NOT NULL,
|
|
valid_start_date DATE NOT NULL,
|
|
valid_end_date DATE NOT NULL,
|
|
invalid_reason VARCHAR(1) NULL)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE relationship (
|
|
relationship_id VARCHAR(20) NOT NULL,
|
|
relationship_name VARCHAR(255) NOT NULL,
|
|
is_hierarchical VARCHAR(1) NOT NULL,
|
|
defines_ancestry VARCHAR(1) NOT NULL,
|
|
reverse_relationship_id VARCHAR(20) NOT NULL,
|
|
relationship_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE concept_synonym (
|
|
concept_id INTEGER NOT NULL,
|
|
concept_synonym_name VARCHAR(1000) NOT NULL,
|
|
language_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE concept_ancestor (
|
|
ancestor_concept_id INTEGER NOT NULL,
|
|
descendant_concept_id INTEGER NOT NULL,
|
|
min_levels_of_separation INTEGER NOT NULL,
|
|
max_levels_of_separation INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE source_to_concept_map (
|
|
source_code VARCHAR(50) NOT NULL,
|
|
source_concept_id INTEGER NOT NULL,
|
|
source_vocabulary_id VARCHAR(20) NOT NULL,
|
|
source_code_description VARCHAR(255) NULL,
|
|
target_concept_id INTEGER NOT NULL,
|
|
target_vocabulary_id VARCHAR(20) NOT NULL,
|
|
valid_start_date DATE NOT NULL,
|
|
valid_end_date DATE NOT NULL,
|
|
invalid_reason VARCHAR(1) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE drug_strength (
|
|
drug_concept_id INTEGER NOT NULL,
|
|
ingredient_concept_id INTEGER NOT NULL,
|
|
amount_value NUMERIC NULL,
|
|
amount_unit_concept_id INTEGER NULL,
|
|
numerator_value NUMERIC NULL,
|
|
numerator_unit_concept_id INTEGER NULL,
|
|
denominator_value NUMERIC NULL,
|
|
denominator_unit_concept_id INTEGER NULL,
|
|
box_size INTEGER NULL,
|
|
valid_start_date DATE NOT NULL,
|
|
valid_end_date DATE NOT NULL,
|
|
invalid_reason VARCHAR(1) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE cohort_definition (
|
|
cohort_definition_id INTEGER NOT NULL,
|
|
cohort_definition_name VARCHAR(255) NOT NULL,
|
|
cohort_definition_description TEXT NULL,
|
|
definition_type_concept_id INTEGER NOT NULL,
|
|
cohort_definition_syntax TEXT NULL,
|
|
subject_concept_id INTEGER NOT NULL,
|
|
cohort_initiation_date DATE NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE attribute_definition (
|
|
attribute_definition_id INTEGER NOT NULL,
|
|
attribute_name VARCHAR(255) NOT NULL,
|
|
attribute_description TEXT NULL,
|
|
attribute_type_concept_id INTEGER NOT NULL,
|
|
attribute_syntax TEXT NULL
|
|
)
|
|
;
|
|
|
|
|
|
/**************************
|
|
|
|
Standardized meta-data
|
|
|
|
***************************/
|
|
|
|
|
|
CREATE TABLE cdm_source
|
|
(
|
|
cdm_source_name VARCHAR(255) NOT NULL,
|
|
cdm_source_abbreviation VARCHAR(25) NULL,
|
|
cdm_holder VARCHAR(255) NULL,
|
|
source_description TEXT NULL,
|
|
source_documentation_reference VARCHAR(255) NULL,
|
|
cdm_etl_reference VARCHAR(255) NULL,
|
|
source_release_date DATE NULL,
|
|
cdm_release_date DATE NULL,
|
|
cdm_version VARCHAR(10) NULL,
|
|
vocabulary_version VARCHAR(20) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized clinical data
|
|
|
|
************************/
|
|
|
|
|
|
CREATE TABLE person
|
|
(
|
|
person_id INTEGER NOT NULL ,
|
|
gender_concept_id INTEGER NOT NULL ,
|
|
year_of_birth INTEGER NOT NULL ,
|
|
month_of_birth INTEGER NULL,
|
|
day_of_birth INTEGER NULL,
|
|
birth_datetime TIMESTAMP NULL,
|
|
race_concept_id INTEGER NOT NULL,
|
|
ethnicity_concept_id INTEGER NOT NULL,
|
|
location_id INTEGER NULL,
|
|
provider_id INTEGER NULL,
|
|
care_site_id INTEGER NULL,
|
|
person_source_value VARCHAR(50) NULL,
|
|
gender_source_value VARCHAR(50) NULL,
|
|
gender_source_concept_id INTEGER NULL,
|
|
race_source_value VARCHAR(50) NULL,
|
|
race_source_concept_id INTEGER NULL,
|
|
ethnicity_source_value VARCHAR(50) NULL,
|
|
ethnicity_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
|
|
CREATE TABLE observation_period
|
|
(
|
|
observation_period_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
observation_period_start_date DATE NOT NULL ,
|
|
observation_period_start_datetime TIMESTAMP NOT NULL ,
|
|
observation_period_end_date DATE NOT NULL ,
|
|
observation_period_end_datetime TIMESTAMP NOT NULL ,
|
|
period_type_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE specimen
|
|
(
|
|
specimen_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
specimen_concept_id INTEGER NOT NULL ,
|
|
specimen_type_concept_id INTEGER NOT NULL ,
|
|
specimen_date DATE NOT NULL ,
|
|
specimen_datetime TIMESTAMP NULL ,
|
|
quantity NUMERIC NULL ,
|
|
unit_concept_id INTEGER NULL ,
|
|
anatomic_site_concept_id INTEGER NULL ,
|
|
disease_status_concept_id INTEGER NULL ,
|
|
specimen_source_id VARCHAR(50) NULL ,
|
|
specimen_source_value VARCHAR(50) NULL ,
|
|
unit_source_value VARCHAR(50) NULL ,
|
|
anatomic_site_source_value VARCHAR(50) NULL ,
|
|
disease_status_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE death
|
|
(
|
|
person_id INTEGER NOT NULL ,
|
|
death_date DATE NOT NULL ,
|
|
death_datetime TIMESTAMP NULL ,
|
|
death_type_concept_id INTEGER NOT NULL ,
|
|
cause_concept_id INTEGER NULL ,
|
|
cause_source_value VARCHAR(50) NULL,
|
|
cause_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE visit_occurrence
|
|
(
|
|
visit_occurrence_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
visit_concept_id INTEGER NOT NULL ,
|
|
visit_start_date DATE NOT NULL ,
|
|
visit_start_datetime TIMESTAMP NULL ,
|
|
visit_end_date DATE NOT NULL ,
|
|
visit_end_datetime TIMESTAMP NULL ,
|
|
visit_type_concept_id INTEGER NOT NULL ,
|
|
provider_id INTEGER NULL,
|
|
care_site_id INTEGER NULL,
|
|
visit_source_value VARCHAR(50) NULL,
|
|
visit_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE procedure_occurrence
|
|
(
|
|
procedure_occurrence_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
procedure_concept_id INTEGER NOT NULL ,
|
|
procedure_date DATE NOT NULL ,
|
|
procedure_datetime TIMESTAMP NOT NULL ,
|
|
procedure_type_concept_id INTEGER NOT NULL ,
|
|
modifier_concept_id INTEGER NULL ,
|
|
quantity INTEGER NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
procedure_source_value VARCHAR(50) NULL ,
|
|
procedure_source_concept_id INTEGER NULL ,
|
|
qualifier_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE drug_exposure
|
|
(
|
|
drug_exposure_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
drug_concept_id INTEGER NOT NULL ,
|
|
drug_exposure_start_date DATE NOT NULL ,
|
|
drug_exposure_start_datetime TIMESTAMP NOT NULL ,
|
|
drug_exposure_end_date DATE NULL ,
|
|
drug_exposure_end_datetime TIMESTAMP NULL ,
|
|
drug_type_concept_id INTEGER NOT NULL ,
|
|
stop_reason VARCHAR(20) NULL ,
|
|
refills INTEGER NULL ,
|
|
quantity NUMERIC NULL ,
|
|
days_supply INTEGER NULL ,
|
|
sig TEXT NULL ,
|
|
route_concept_id INTEGER NULL ,
|
|
effective_drug_dose NUMERIC NULL ,
|
|
dose_unit_concept_id INTEGER NULL ,
|
|
lot_number VARCHAR(50) NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
drug_source_value VARCHAR(50) NULL ,
|
|
drug_source_concept_id INTEGER NULL ,
|
|
route_source_value VARCHAR(50) NULL ,
|
|
dose_unit_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE device_exposure
|
|
(
|
|
device_exposure_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
device_concept_id INTEGER NOT NULL ,
|
|
device_exposure_start_date DATE NOT NULL ,
|
|
device_exposure_start_datetime TIMESTAMP NOT NULL ,
|
|
device_exposure_end_date DATE NULL ,
|
|
device_exposure_end_datetime TIMESTAMP NULL ,
|
|
device_type_concept_id INTEGER NOT NULL ,
|
|
unique_device_id VARCHAR(50) NULL ,
|
|
quantity INTEGER NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
device_source_value VARCHAR(100) NULL ,
|
|
device_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE condition_occurrence
|
|
(
|
|
condition_occurrence_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
condition_concept_id INTEGER NOT NULL ,
|
|
condition_start_date DATE NOT NULL ,
|
|
condition_start_datetime TIMESTAMP NOT NULL ,
|
|
condition_end_date DATE NULL ,
|
|
condition_end_datetime TIMESTAMP NULL ,
|
|
condition_type_concept_id INTEGER NOT NULL ,
|
|
stop_reason VARCHAR(20) NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
condition_source_value VARCHAR(50) NULL ,
|
|
condition_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE measurement
|
|
(
|
|
measurement_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
measurement_concept_id INTEGER NOT NULL ,
|
|
measurement_date DATE NOT NULL ,
|
|
measurement_datetime TIMESTAMP NULL ,
|
|
measurement_type_concept_id INTEGER NOT NULL ,
|
|
operator_concept_id INTEGER NULL ,
|
|
value_as_number NUMERIC NULL ,
|
|
value_as_concept_id INTEGER NULL ,
|
|
unit_concept_id INTEGER NULL ,
|
|
range_low NUMERIC NULL ,
|
|
range_high NUMERIC NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
measurement_source_value VARCHAR(50) NULL ,
|
|
measurement_source_concept_id INTEGER NULL ,
|
|
unit_source_value VARCHAR(50) NULL ,
|
|
value_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE note
|
|
(
|
|
note_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
note_date DATE NOT NULL ,
|
|
note_datetime TIMESTAMP NULL ,
|
|
note_type_concept_id INTEGER NOT NULL ,
|
|
note_text TEXT NOT NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
note_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE observation
|
|
(
|
|
observation_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
observation_concept_id INTEGER NOT NULL ,
|
|
observation_date DATE NOT NULL ,
|
|
observation_datetime TIMESTAMP NULL ,
|
|
observation_type_concept_id INTEGER NOT NULL ,
|
|
value_as_number NUMERIC NULL ,
|
|
value_as_string VARCHAR(60) NULL ,
|
|
value_as_concept_id INTEGER NULL ,
|
|
qualifier_concept_id INTEGER NULL ,
|
|
unit_concept_id INTEGER NULL ,
|
|
provider_id INTEGER NULL ,
|
|
visit_occurrence_id INTEGER NULL ,
|
|
observation_source_value VARCHAR(50) NULL ,
|
|
observation_source_concept_id INTEGER NULL ,
|
|
unit_source_value VARCHAR(50) NULL ,
|
|
qualifier_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE fact_relationship
|
|
(
|
|
domain_concept_id_1 INTEGER NOT NULL ,
|
|
fact_id_1 INTEGER NOT NULL ,
|
|
domain_concept_id_2 INTEGER NOT NULL ,
|
|
fact_id_2 INTEGER NOT NULL ,
|
|
relationship_concept_id INTEGER NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized health system data
|
|
|
|
************************/
|
|
|
|
|
|
|
|
CREATE TABLE location
|
|
(
|
|
location_id INTEGER NOT NULL ,
|
|
address_1 VARCHAR(50) NULL ,
|
|
address_2 VARCHAR(50) NULL ,
|
|
city VARCHAR(50) NULL ,
|
|
state VARCHAR(2) NULL ,
|
|
zip VARCHAR(9) NULL ,
|
|
county VARCHAR(20) NULL ,
|
|
location_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE care_site
|
|
(
|
|
care_site_id INTEGER NOT NULL ,
|
|
care_site_name VARCHAR(255) NULL ,
|
|
place_of_service_concept_id INTEGER NULL ,
|
|
location_id INTEGER NULL ,
|
|
care_site_source_value VARCHAR(50) NULL ,
|
|
place_of_service_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE provider
|
|
(
|
|
provider_id INTEGER NOT NULL ,
|
|
provider_name VARCHAR(255) NULL ,
|
|
NPI VARCHAR(20) NULL ,
|
|
DEA VARCHAR(20) NULL ,
|
|
specialty_concept_id INTEGER NULL ,
|
|
care_site_id INTEGER NULL ,
|
|
year_of_birth INTEGER NULL ,
|
|
gender_concept_id INTEGER NULL ,
|
|
provider_source_value VARCHAR(50) NULL ,
|
|
specialty_source_value VARCHAR(50) NULL ,
|
|
specialty_source_concept_id INTEGER NULL ,
|
|
gender_source_value VARCHAR(50) NULL ,
|
|
gender_source_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized health economics
|
|
|
|
************************/
|
|
|
|
|
|
CREATE TABLE payer_plan_period
|
|
(
|
|
payer_plan_period_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
payer_plan_period_start_date DATE NOT NULL ,
|
|
payer_plan_period_end_date DATE NOT NULL ,
|
|
payer_source_value VARCHAR (50) NULL ,
|
|
plan_source_value VARCHAR (50) NULL ,
|
|
family_source_value VARCHAR (50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
/* The individual cost tables are being phased out and will disappear soon
|
|
|
|
CREATE TABLE visit_cost
|
|
(
|
|
visit_cost_id INTEGER NOT NULL ,
|
|
visit_occurrence_id INTEGER NOT NULL ,
|
|
currency_concept_id INTEGER NULL ,
|
|
paid_copay NUMERIC NULL ,
|
|
paid_coinsurance NUMERIC NULL ,
|
|
paid_toward_deductible NUMERIC NULL ,
|
|
paid_by_payer NUMERIC NULL ,
|
|
paid_by_coordination_benefits NUMERIC NULL ,
|
|
total_out_of_pocket NUMERIC NULL ,
|
|
total_paid NUMERIC NULL ,
|
|
payer_plan_period_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE procedure_cost
|
|
(
|
|
procedure_cost_id INTEGER NOT NULL ,
|
|
procedure_occurrence_id INTEGER NOT NULL ,
|
|
currency_concept_id INTEGER NULL ,
|
|
paid_copay NUMERIC NULL ,
|
|
paid_coinsurance NUMERIC NULL ,
|
|
paid_toward_deductible NUMERIC NULL ,
|
|
paid_by_payer NUMERIC NULL ,
|
|
paid_by_coordination_benefits NUMERIC NULL ,
|
|
total_out_of_pocket NUMERIC NULL ,
|
|
total_paid NUMERIC NULL ,
|
|
revenue_code_concept_id INTEGER NULL ,
|
|
payer_plan_period_id INTEGER NULL ,
|
|
revenue_code_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
CREATE TABLE drug_cost
|
|
(
|
|
drug_cost_id INTEGER NOT NULL ,
|
|
drug_exposure_id INTEGER NOT NULL ,
|
|
currency_concept_id INTEGER NULL ,
|
|
paid_copay NUMERIC NULL ,
|
|
paid_coinsurance NUMERIC NULL ,
|
|
paid_toward_deductible NUMERIC NULL ,
|
|
paid_by_payer NUMERIC NULL ,
|
|
paid_by_coordination_benefits NUMERIC NULL ,
|
|
total_out_of_pocket NUMERIC NULL ,
|
|
total_paid NUMERIC NULL ,
|
|
ingredient_cost NUMERIC NULL ,
|
|
dispensing_fee NUMERIC NULL ,
|
|
average_wholesale_price NUMERIC NULL ,
|
|
payer_plan_period_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
|
|
CREATE TABLE device_cost
|
|
(
|
|
device_cost_id INTEGER NOT NULL ,
|
|
device_exposure_id INTEGER NOT NULL ,
|
|
currency_concept_id INTEGER NULL ,
|
|
paid_copay NUMERIC NULL ,
|
|
paid_coinsurance NUMERIC NULL ,
|
|
paid_toward_deductible NUMERIC NULL ,
|
|
paid_by_payer NUMERIC NULL ,
|
|
paid_by_coordination_benefits NUMERIC NULL ,
|
|
total_out_of_pocket NUMERIC NULL ,
|
|
total_paid NUMERIC NULL ,
|
|
payer_plan_period_id INTEGER NULL
|
|
)
|
|
;
|
|
*/
|
|
|
|
|
|
CREATE TABLE cost
|
|
(
|
|
cost_id INTEGER NOT NULL ,
|
|
cost_event_id INTEGER NOT NULL ,
|
|
cost_domain_id VARCHAR(20) NOT NULL ,
|
|
cost_type_concept_id INTEGER NOT NULL ,
|
|
currency_concept_id INTEGER NULL ,
|
|
total_charge NUMERIC NULL ,
|
|
total_cost NUMERIC NULL ,
|
|
total_paid NUMERIC NULL ,
|
|
paid_by_payer NUMERIC NULL ,
|
|
paid_by_patient NUMERIC NULL ,
|
|
paid_patient_copay NUMERIC NULL ,
|
|
paid_patient_coinsurance NUMERIC NULL ,
|
|
paid_patient_deductible NUMERIC NULL ,
|
|
paid_by_primary NUMERIC NULL ,
|
|
paid_ingredient_cost NUMERIC NULL ,
|
|
paid_dispensing_fee NUMERIC NULL ,
|
|
payer_plan_period_id INTEGER NULL ,
|
|
amount_allowed NUMERIC NULL ,
|
|
revenue_code_concept_id INTEGER NULL ,
|
|
reveue_code_source_value VARCHAR(50) NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
|
|
/************************
|
|
|
|
Standardized derived elements
|
|
|
|
************************/
|
|
|
|
CREATE TABLE cohort
|
|
(
|
|
cohort_definition_id INTEGER NOT NULL ,
|
|
subject_id INTEGER NOT NULL ,
|
|
cohort_start_date DATE NOT NULL ,
|
|
cohort_end_date DATE NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE cohort_attribute
|
|
(
|
|
cohort_definition_id INTEGER NOT NULL ,
|
|
cohort_start_date DATE NOT NULL ,
|
|
cohort_end_date DATE NOT NULL ,
|
|
subject_id INTEGER NOT NULL ,
|
|
attribute_definition_id INTEGER NOT NULL ,
|
|
value_as_number NUMERIC NULL ,
|
|
value_as_concept_id INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE drug_era
|
|
(
|
|
drug_era_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
drug_concept_id INTEGER NOT NULL ,
|
|
drug_era_start_date DATE NOT NULL ,
|
|
drug_era_end_date DATE NOT NULL ,
|
|
drug_exposure_count INTEGER NULL ,
|
|
gap_days INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
CREATE TABLE dose_era
|
|
(
|
|
dose_era_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
drug_concept_id INTEGER NOT NULL ,
|
|
unit_concept_id INTEGER NOT NULL ,
|
|
dose_value NUMERIC NOT NULL ,
|
|
dose_era_start_date DATE NOT NULL ,
|
|
dose_era_end_date DATE NOT NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
CREATE TABLE condition_era
|
|
(
|
|
condition_era_id INTEGER NOT NULL ,
|
|
person_id INTEGER NOT NULL ,
|
|
condition_concept_id INTEGER NOT NULL ,
|
|
condition_era_start_date DATE NOT NULL ,
|
|
condition_era_end_date DATE NOT NULL ,
|
|
condition_occurrence_count INTEGER NULL
|
|
)
|
|
;
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|