mz-health/OMOP
mz-health
/
OMOP
mirror of https://github.com/OHDSI/CommonDataModel.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
OMOP Common Data Model by OHDSI
349 Commits 20 Branches 19 Tags 22 MiB
R 99.5%
CSS 0.4%
HTML 0.1%
Go to file
Clair Blacketer cc5e8f7f28 Added v6.0 pdf 2018-10-10 15:04:27 -04:00
BigQuery Updated place_of_service_concept_id to not null 2018-10-02 15:56:21 -04:00
CodeExcerpts Query for mapping to standard vocabularies 2017-12-08 12:16:27 -05:00
Documentation/CommonDataModel_Wiki_Files Added v6.0 pdf 2018-10-10 15:04:27 -04:00
Impala Impala era datetimes 2018-10-02 09:21:26 -04:00
Netezza concept_id not null updates 2018-10-03 10:13:20 -04:00
Oracle concept_id not null updates 2018-10-03 10:13:20 -04:00
ParallelDataWarehouse concept_id not null updates 2018-10-03 10:13:20 -04:00
PostgreSQL concept_id not null updates 2018-10-03 10:13:20 -04:00
Redshift concept_id not null updates 2018-10-03 10:13:20 -04:00
Sql Server concept_id not null updates 2018-10-03 10:13:20 -04:00
.gitignore Addresses #64, #70, #79, #92, #120, #132, #131 in code, documentation is still being updated to reflect these changes. 2017-11-09 09:30:50 -05:00
LICENSE Initial commit 2014-10-14 16:20:22 -04:00
OMOP_CDM_v6_0.csv Added v6.0 pdf 2018-10-10 15:04:27 -04:00
OMOP_CDM_v6_0.pdf Added v6.0 pdf 2018-10-10 15:04:27 -04:00
README.md CDM v6.0 updated README 2018-10-09 15:24:07 -04:00

README.md

Common Data Model v6.0

See full CDM specification file on our github wiki or in the [CDM V6.0 PDF]

Release Notes for v6.0

This version address the following issues/pull requests:

CDM

  • #81 Adds the COST table
  • #137 Adds the SURVEY_CONDUCT table
  • #181 Adds the LOCATION_HISTORY table
  • #91 Latitude and longitude added to LOCATION table
  • #107 Contract owner information added to PAYER_PLAN_PERIOD
  • #120 New fields added to PAYER_PLAN_PERIOD (PAYER_CONCEPT_ID, PLAN_CONCEPT_ID)
  • #166 Record inserted into METADATA to document CDM version
  • #172 NOTE_EVENT_ID and NOTE_DOMAIN_ID (NOTE_EVENT_TABLE_CONCEPT_ID) added to NOTE
  • #198 Change IDs to BIGINT
  • #153 ADMISSION_SOURCE_CONCEPT_ID changed to ADMITTED_FROM_CONCEPT_ID
  • #214 All CONCEPT_IDs are mandatory except for UNIT_CONCEPT_ID, VALUE_AS_CONCEPT_ID, and OPERATOR_CONCEPT_ID
  • #164 Any reference to DOMAIN_ID was switched to EVENT_FIELD_CONCEPT_ID
  • #212 CDM Results schema created with tables COHORT and COHORT_DEFINITION
  • #210 DEATH table removed and cause of death now stored in CONDITION_OCCURRENCE
  • #166 Record inserted into METADATA identifying the CDM version
  • #172 Added NOTE_EVENT_ID and EVENT_FIELD_CONCEPT_ID to NOTE table

Vocabulary

  • #186 Keep deprecated CPT concepts active and standard
  • #85 NOTE_NLP concepts added

Wiki

  • #188 Added foreign key description to wiki files
  • All THEMIS rules added to wiki

Additional Updates

  • DATE fields are now optional and DATETIME fields are mandatory

This repo contains the definition of the OMOP Common Data Model. It supports the SQL technologies: BigQuery, Impala, Netezza, Oracle, Parallel Data Warehouse, Postgres, Redshift, and SQL Server. For each, the DDL, constraints and indexes (if appropriate) are defined.

Versions are defined using tagging and versioning. Full versions (V6, 7 etc.) are usually released at most once a year and are not backwards compatible. Minor versions (V5.1, 5.2 etc.) are not guaranteed to be backwards compatible though an effort is made to make sure that current queries will not break. Micro versions (V5.1.1, V5.1.2 etc.) are released irregularly and often, and contain small hot fixes or backward compatible changes to the last minor version.