diff --git a/StandardizedClinicalDataTables/SPECIMEN.md b/StandardizedClinicalDataTables/SPECIMEN.md index a4de26e..98ad335 100644 --- a/StandardizedClinicalDataTables/SPECIMEN.md +++ b/StandardizedClinicalDataTables/SPECIMEN.md @@ -1 +1,22 @@ -#specimen \ No newline at end of file +The specimen domain contains the records identifying biological samples from a person. + +Field|Required|Type|Description +:----|:----|:-----|:----- +|specimen_id|Yes|integer|A unique identifier for each specimen.| +|person_id|Yes|integer|A foreign key identifier to the Person for whom the Specimen is recorded.| +|specimen_concept_id|Yes|integer|A foreign key referring to a Standard Concept identifier in the Standardized Vocabularies for the Specimen.| +|specimen_type_concept_id|Yes|integer|A foreign key referring to the Concept identifier in the Standardized Vocabularies reflecting the system of record from which the Specimen was represented in the source data.| +|specimen_date|Yes|date|The date the specimen was obtained from the Person.| +|specimen_datetime|No|datetime|The date and time on the date when the Specimen was obtained from the person.| +|quantity|No|float|The amount of specimen collection from the person during the sampling procedure.| +|unit_concept_id|No|integer|A foreign key to a Standard Concept identifier for the Unit associated with the numeric quantity of the Specimen collection.| +|anatomic_site_concept_id|No|integer|A foreign key to a Standard Concept identifier for the anatomic location of specimen collection.| +|disease_status_concept_id|No|integer|A foreign key to a Standard Concept identifier for the Disease Status of specimen collection.| +|specimen_source_id|No|varchar(50)|The Specimen identifier as it appears in the source data.| +|specimen_source_value|No|varchar(50)|The Specimen value as it appears in the source data. This value is mapped to a Standard Concept in the Standardized Vocabularies and the original code is, stored here for reference.| +|unit_source_value|No|varchar(50)|The information about the Unit as detailed in the source.| +|anatomic_site_source_value|No|varchar(50)|The information about the anatomic site as detailed in the source.| +|disease_status_source_value|No|varchar(50)|The information about the disease status as detailed in the source.| + +### Conventions + * Anatomic site is coded at the most specific level of granularity possible, such that higher level classifications can be derived using the Standardized Vocabularies. \ No newline at end of file