From dbb4350e973aabec0a7bdb69b9f39131d4f00519 Mon Sep 17 00:00:00 2001 From: clairblacketer Date: Tue, 20 Jun 2017 14:48:43 -0400 Subject: [PATCH] Fixed formatting --- StandardizedClinicalDataTables/DRUG_EXPOSURE.md | 4 ++-- StandardizedClinicalDataTables/FACT_RELATIONSHIP.md | 2 +- StandardizedClinicalDataTables/MEASUREMENT.md | 2 +- StandardizedClinicalDataTables/NOTE.md | 2 +- StandardizedClinicalDataTables/OBSERVATION.md | 2 +- StandardizedClinicalDataTables/OBSERVATION_PERIOD.md | 2 +- StandardizedClinicalDataTables/PERSON.md | 2 +- StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md | 2 +- StandardizedClinicalDataTables/SPECIMEN.md | 2 +- .../Standardized-Clinical-Data-Tables.md | 2 +- 10 files changed, 11 insertions(+), 11 deletions(-) diff --git a/StandardizedClinicalDataTables/DRUG_EXPOSURE.md b/StandardizedClinicalDataTables/DRUG_EXPOSURE.md index 650b785..9eeea35 100644 --- a/StandardizedClinicalDataTables/DRUG_EXPOSURE.md +++ b/StandardizedClinicalDataTables/DRUG_EXPOSURE.md @@ -2,13 +2,13 @@ The drug exposure domain captures records about the utilization of a Drug when i Drug Exposure is inferred from clinical events associated with orders, prescriptions written, pharmacy dispensings, procedural administrations, and other patient-reported information, for example: - * The “Prescription” section of an EHR captures prescriptions written by physicians or from electronic ordering systems + * The "Prescription" section of an EHR captures prescriptions written by physicians or from electronic ordering systems * The "Medication list" section of an EHR for both non-prescription products and medications prescribed by other providers * Prescriptions filled at dispensing providers such as pharmacies, and then captured in reimbursement claim systems * Drugs administered as part of a Procedure, such as chemotherapy or vaccines. Field|Required|Type|Description -:---------------------------|:--------|:-----|:------------------------------------------------ +:---------------------------|:--------|:------------|:------------------------------------------------ |drug_exposure_id|Yes|integer|A system-generated unique identifier for each Drug utilization event.| |person_id|Yes|integer|A foreign key identifier to the person who is subjected to the Drug. The demographic details of that person are stored in the person table.| |drug_concept_id|Yes|integer|A foreign key that refers to a Standard Concept identifier in the Standardized Vocabularies for the Drug concept.| diff --git a/StandardizedClinicalDataTables/FACT_RELATIONSHIP.md b/StandardizedClinicalDataTables/FACT_RELATIONSHIP.md index 674750c..c69f0a9 100644 --- a/StandardizedClinicalDataTables/FACT_RELATIONSHIP.md +++ b/StandardizedClinicalDataTables/FACT_RELATIONSHIP.md @@ -1,7 +1,7 @@ The FACT_RELATIONSHIP table contains records about the relationships between facts stored as records in any table of the CDM. Relationships can be defined between facts from the same domain (table), or different domains. Examples of Fact Relationships include: Person relationships (parent-child), care site relationships (hierarchical organizational structure of facilities within a health system), indication relationship (between drug exposures and associated conditions), usage relationships (of devices during the course of an associated procedure), or facts derived from one another (measurements derived from an associated specimen). Field|Required|Type|Description -:-------------------------|:--------|:-----|:-------------------------------------------------------------- +:-------------------------|:--------|:------------|:-------------------------------------------------------------- |domain_concept _id_1|Yes|integer|The concept representing the domain of fact one, from which the corresponding table can be inferred.| |fact_id_1|Yes|integer|The unique identifier in the table corresponding to the domain of fact one.| |domain_concept_id_2|Yes|integer|The concept representing the domain of fact two, from which the corresponding table can be inferred.| diff --git a/StandardizedClinicalDataTables/MEASUREMENT.md b/StandardizedClinicalDataTables/MEASUREMENT.md index 42d19ce..7c02810 100644 --- a/StandardizedClinicalDataTables/MEASUREMENT.md +++ b/StandardizedClinicalDataTables/MEASUREMENT.md @@ -1,7 +1,7 @@ The MEASUREMENT table contains records of Measurement, i.e. structured values (numerical or categorical) obtained through systematic and standardized examination or testing of a Person or Person's sample. The MEASUREMENT table contains both orders and results of such Measurements as laboratory tests, vital signs, quantitative findings from pathology reports, etc. Field|Required|Type|Description -:-------------------------|:--------|:-----|:------------------------------------------------ +:-------------------------|:--------|:------------|:------------------------------------------------ |measurement_id|Yes|integer|A unique identifier for each Measurement.| |person_id|Yes|integer|A foreign key identifier to the Person about whom the measurement was recorded. The demographic details of that Person are stored in the PERSON table.| |measurement_concept_id|Yes|integer|A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.| diff --git a/StandardizedClinicalDataTables/NOTE.md b/StandardizedClinicalDataTables/NOTE.md index 038245d..d26c68c 100644 --- a/StandardizedClinicalDataTables/NOTE.md +++ b/StandardizedClinicalDataTables/NOTE.md @@ -1,7 +1,7 @@ The NOTE table captures unstructured information that was recorded by a provider about a patient in free text notes on a given date. Field|Required|Type|Description -:--------------------|:--------|:-----|:-------------------------------------------------------- +:--------------------|:--------|:------------|:-------------------------------------------------------- |note_id|Yes|integer|A unique identifier for each note.| |person_id|Yes|integer|A foreign key identifier to the Person about whom the Note was recorded. The demographic details of that Person are stored in the PERSON table.| |note_date |Yes|date|The date the note was recorded.| diff --git a/StandardizedClinicalDataTables/OBSERVATION.md b/StandardizedClinicalDataTables/OBSERVATION.md index feafcf0..0146ce1 100644 --- a/StandardizedClinicalDataTables/OBSERVATION.md +++ b/StandardizedClinicalDataTables/OBSERVATION.md @@ -1,7 +1,7 @@ The OBSERVATION table captures clinical facts about a Person obtained in the context of examination, questioning or a procedure. Any data that cannot be represented by any other domains, such as social and lifestyle facts, medical history, family history, etc. are recorded here. Field|Required|Type|Description -:--------------------|:--------|:-----|:------------------------------------------------------- +:--------------------|:--------|:------------|:------------------------------------------------------- |observation_id|Yes|integer|A unique identifier for each observation.| |person_id|Yes|integer|A foreign key identifier to the Person about whom the observation was recorded. The demographic details of that Person are stored in the PERSON table.| |observation_concept_id|Yes|integer|A foreign key to the standard observation concept identifier in the Standardized Vocabularies.| diff --git a/StandardizedClinicalDataTables/OBSERVATION_PERIOD.md b/StandardizedClinicalDataTables/OBSERVATION_PERIOD.md index e83bf65..cc51642 100644 --- a/StandardizedClinicalDataTables/OBSERVATION_PERIOD.md +++ b/StandardizedClinicalDataTables/OBSERVATION_PERIOD.md @@ -1,7 +1,7 @@ The OBSERVATION_PERIOD table contains records which uniquely define the spans of time for which a Person is at-risk to have clinical events recorded within the source systems, even if no events in fact are recorded (healthy patient with no healthcare interactions). Field|Required|Type|Description -:------------------------------|:--------|:-----|:---------------------------------------------- +:------------------------------|:--------|:------------|:---------------------------------------------- |observation_period_id|Yes|integer|A unique identifier for each observation period.| |person_id|Yes|integer|A foreign key identifier to the person for whom the observation period is defined. The demographic details of that person are stored in the person table.| |observation_period_start_date|Yes|date|The start date of the observation period for which data are available from the data source.| diff --git a/StandardizedClinicalDataTables/PERSON.md b/StandardizedClinicalDataTables/PERSON.md index 1d2557f..6325022 100644 --- a/StandardizedClinicalDataTables/PERSON.md +++ b/StandardizedClinicalDataTables/PERSON.md @@ -1,7 +1,7 @@ The Person Domain contains records that uniquely identify each patient in the source data who is time at-risk to have clinical observations recorded within the source systems. Field|Required|Type|Description -:------------------------|:--------|:-----|:----------------------------------------------- +:------------------------|:--------|:------------|:----------------------------------------------- |person_id|Yes|integer|A unique identifier for each person.| |gender_concept_id|Yes|integer|A foreign key that refers to an identifier in the CONCEPT table for the unique gender of the person.| |year_of_birth |Yes|integer|The year of birth of the person. For data sources with date of birth, the year is extracted. For data sources where the year of birth is not available, the approximate year of birth is derived based on any age group categorization available.| diff --git a/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md b/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md index 2a5107e..0844f44 100644 --- a/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md +++ b/StandardizedClinicalDataTables/PROCEDURE_OCCURRENCE.md @@ -3,7 +3,7 @@ The PROCEDURE_OCCURRENCE table contains records of activities or processes order * Electronic Health Records that capture procedures as orders. Field|Required|Type|Description -:------------------------|:--------|:-----|:---------------------------------------- +:------------------------|:--------|:------------|:---------------------------------------- |procedure_occurrence_id|Yes|integer|A system-generated unique identifier for each Procedure Occurrence.| |person_id|Yes|integer|A foreign key identifier to the Person who is subjected to the Procedure. The demographic details of that Person are stored in the PERSON table.| |procedure_concept_id|Yes|integer|A foreign key that refers to a standard procedure Concept identifier in the Standardized Vocabularies.| diff --git a/StandardizedClinicalDataTables/SPECIMEN.md b/StandardizedClinicalDataTables/SPECIMEN.md index 95b7b21..164f8c9 100644 --- a/StandardizedClinicalDataTables/SPECIMEN.md +++ b/StandardizedClinicalDataTables/SPECIMEN.md @@ -1,7 +1,7 @@ The specimen domain contains the records identifying biological samples from a person. Field|Required|Type|Description -:-------------------------|:--------|:-----|:------------------------------------------------------ +:-------------------------|:--------|:------------|:------------------------------------------------------ |specimen_id|Yes|integer|A unique identifier for each specimen.| |person_id|Yes|integer|A foreign key identifier to the Person for whom the Specimen is recorded.| |specimen_concept_id|Yes|integer|A foreign key referring to a Standard Concept identifier in the Standardized Vocabularies for the Specimen.| diff --git a/StandardizedClinicalDataTables/Standardized-Clinical-Data-Tables.md b/StandardizedClinicalDataTables/Standardized-Clinical-Data-Tables.md index 1cca49a..a917ef8 100644 --- a/StandardizedClinicalDataTables/Standardized-Clinical-Data-Tables.md +++ b/StandardizedClinicalDataTables/Standardized-Clinical-Data-Tables.md @@ -15,4 +15,4 @@ These tables contain the core information about the clinical events that occurred longitudinally during valid Observation Periods for each Person, as well as demographic information for the Person. Below provides an entity-relationship diagram highlighting the tables within the Standardized Clinical Data portion of the OMOP Common Data Model: -![](http://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:cdm:standard_clinical_data_tables.png) \ No newline at end of file +![Clinical data entity-relationship diagram](http://www.ohdsi.org/web/wiki/lib/exe/fetch.php?media=documentation:cdm:standard_clinical_data_tables.png) \ No newline at end of file