diff --git a/bundle/config/mutator/mutator.go b/bundle/config/mutator/mutator.go
index 9a2c828b..ae0d7e5f 100644
--- a/bundle/config/mutator/mutator.go
+++ b/bundle/config/mutator/mutator.go
@@ -9,12 +9,12 @@ import (
 
 func DefaultMutators() []bundle.Mutator {
 	return []bundle.Mutator{
-		// Execute preinit script before loading any configuration files.
+		loader.EntryPoint(),
+
+		// Execute preinit script before processing includes.
 		// It needs to be done before processing configuration files to allow
 		// the script to modify the configuration or add own configuration files.
 		scripts.Execute(config.ScriptPreInit),
-
-		loader.EntryPoint(),
 		loader.ProcessRootIncludes(),
 
 		// Verify that the CLI version is within the specified range.