diff --git a/bundle/config/resources.go b/bundle/config/resources.go
index f79a9714..aa945df4 100644
--- a/bundle/config/resources.go
+++ b/bundle/config/resources.go
@@ -17,114 +17,6 @@ type Resources struct {
 	Experiments           map[string]*resources.MlflowExperiment     `json:"experiments,omitempty"`
 	ModelServingEndpoints map[string]*resources.ModelServingEndpoint `json:"model_serving_endpoints,omitempty"`
 	RegisteredModels      map[string]*resources.RegisteredModel      `json:"registered_models,omitempty"`
-	Schemas               map[string]*resources.Schema               `json:"schemas,omitempty"`
-}
-
-type UniqueResourceIdTracker struct {
-	Type       map[string]string
-	ConfigPath map[string]string
-}
-
-// verifies merging is safe by checking no duplicate identifiers exist
-func (r *Resources) VerifySafeMerge(other *Resources) error {
-	rootTracker, err := r.VerifyUniqueResourceIdentifiers()
-	if err != nil {
-		return err
-	}
-	otherTracker, err := other.VerifyUniqueResourceIdentifiers()
-	if err != nil {
-		return err
-	}
-	for k := range otherTracker.Type {
-		if _, ok := rootTracker.Type[k]; ok {
-			return fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				rootTracker.Type[k],
-				rootTracker.ConfigPath[k],
-				otherTracker.Type[k],
-				otherTracker.ConfigPath[k],
-			)
-		}
-	}
-	return nil
-}
-
-// This function verifies there are no duplicate names used for the resource definations
-func (r *Resources) VerifyUniqueResourceIdentifiers() (*UniqueResourceIdTracker, error) {
-	tracker := &UniqueResourceIdTracker{
-		Type:       make(map[string]string),
-		ConfigPath: make(map[string]string),
-	}
-	for k := range r.Jobs {
-		tracker.Type[k] = "job"
-		tracker.ConfigPath[k] = r.Jobs[k].ConfigFilePath
-	}
-	for k := range r.Pipelines {
-		if _, ok := tracker.Type[k]; ok {
-			return tracker, fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				tracker.Type[k],
-				tracker.ConfigPath[k],
-				"pipeline",
-				r.Pipelines[k].ConfigFilePath,
-			)
-		}
-		tracker.Type[k] = "pipeline"
-		tracker.ConfigPath[k] = r.Pipelines[k].ConfigFilePath
-	}
-	for k := range r.Models {
-		if _, ok := tracker.Type[k]; ok {
-			return tracker, fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				tracker.Type[k],
-				tracker.ConfigPath[k],
-				"mlflow_model",
-				r.Models[k].ConfigFilePath,
-			)
-		}
-		tracker.Type[k] = "mlflow_model"
-		tracker.ConfigPath[k] = r.Models[k].ConfigFilePath
-	}
-	for k := range r.Experiments {
-		if _, ok := tracker.Type[k]; ok {
-			return tracker, fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				tracker.Type[k],
-				tracker.ConfigPath[k],
-				"mlflow_experiment",
-				r.Experiments[k].ConfigFilePath,
-			)
-		}
-		tracker.Type[k] = "mlflow_experiment"
-		tracker.ConfigPath[k] = r.Experiments[k].ConfigFilePath
-	}
-	for k := range r.ModelServingEndpoints {
-		if _, ok := tracker.Type[k]; ok {
-			return tracker, fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				tracker.Type[k],
-				tracker.ConfigPath[k],
-				"model_serving_endpoint",
-				r.ModelServingEndpoints[k].ConfigFilePath,
-			)
-		}
-		tracker.Type[k] = "model_serving_endpoint"
-		tracker.ConfigPath[k] = r.ModelServingEndpoints[k].ConfigFilePath
-	}
-	for k := range r.RegisteredModels {
-		if _, ok := tracker.Type[k]; ok {
-			return tracker, fmt.Errorf("multiple resources named %s (%s at %s, %s at %s)",
-				k,
-				tracker.Type[k],
-				tracker.ConfigPath[k],
-				"registered_model",
-				r.RegisteredModels[k].ConfigFilePath,
-			)
-		}
-		tracker.Type[k] = "registered_model"
-		tracker.ConfigPath[k] = r.RegisteredModels[k].ConfigFilePath
-	}
-	return tracker, nil
 }
 
 // ConfigureConfigFilePath sets the specified path for all resources contained in this instance.
diff --git a/bundle/config/resources/schema.go b/bundle/config/resources/schema.go
deleted file mode 100644
index d8f50a59..00000000
--- a/bundle/config/resources/schema.go
+++ /dev/null
@@ -1,25 +0,0 @@
-package resources
-
-import (
-	"github.com/databricks/cli/bundle/config/paths"
-	"github.com/databricks/databricks-sdk-go/service/catalog"
-)
-
-type Schema struct {
-	// List of grants to apply on this schema.
-	Grants []Grant `json:"grants,omitempty"`
-
-	// This represents the id which is the full name of the schema
-	// (catalog_name.schema_name) that can be used
-	// as a reference in other resources. This value is returned by terraform.
-	// TODO: verify the accuracy of this comment
-	ID string `json:"id,omitempty" bundle:"readonly"`
-
-	// Path to config file where the resource is defined. All bundle resources
-	// include this for interpolation purposes.
-	paths.Paths
-
-	*catalog.CreateSchema
-
-	ModifiedStatus ModifiedStatus `json:"modified_status,omitempty" bundle:"internal"`
-}
diff --git a/bundle/config/resources_test.go b/bundle/config/resources_test.go
deleted file mode 100644
index 9c4104e4..00000000
--- a/bundle/config/resources_test.go
+++ /dev/null
@@ -1,127 +0,0 @@
-package config
-
-import (
-	"testing"
-
-	"github.com/databricks/cli/bundle/config/paths"
-	"github.com/databricks/cli/bundle/config/resources"
-	"github.com/stretchr/testify/assert"
-)
-
-func TestVerifyUniqueResourceIdentifiers(t *testing.T) {
-	r := Resources{
-		Jobs: map[string]*resources.Job{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo.yml",
-				},
-			},
-		},
-		Models: map[string]*resources.MlflowModel{
-			"bar": {
-				Paths: paths.Paths{
-					ConfigFilePath: "bar.yml",
-				},
-			},
-		},
-		Experiments: map[string]*resources.MlflowExperiment{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo2.yml",
-				},
-			},
-		},
-	}
-	_, err := r.VerifyUniqueResourceIdentifiers()
-	assert.ErrorContains(t, err, "multiple resources named foo (job at foo.yml, mlflow_experiment at foo2.yml)")
-}
-
-func TestVerifySafeMerge(t *testing.T) {
-	r := Resources{
-		Jobs: map[string]*resources.Job{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo.yml",
-				},
-			},
-		},
-		Models: map[string]*resources.MlflowModel{
-			"bar": {
-				Paths: paths.Paths{
-					ConfigFilePath: "bar.yml",
-				},
-			},
-		},
-	}
-	other := Resources{
-		Pipelines: map[string]*resources.Pipeline{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo2.yml",
-				},
-			},
-		},
-	}
-	err := r.VerifySafeMerge(&other)
-	assert.ErrorContains(t, err, "multiple resources named foo (job at foo.yml, pipeline at foo2.yml)")
-}
-
-func TestVerifySafeMergeForSameResourceType(t *testing.T) {
-	r := Resources{
-		Jobs: map[string]*resources.Job{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo.yml",
-				},
-			},
-		},
-		Models: map[string]*resources.MlflowModel{
-			"bar": {
-				Paths: paths.Paths{
-					ConfigFilePath: "bar.yml",
-				},
-			},
-		},
-	}
-	other := Resources{
-		Jobs: map[string]*resources.Job{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo2.yml",
-				},
-			},
-		},
-	}
-	err := r.VerifySafeMerge(&other)
-	assert.ErrorContains(t, err, "multiple resources named foo (job at foo.yml, job at foo2.yml)")
-}
-
-func TestVerifySafeMergeForRegisteredModels(t *testing.T) {
-	r := Resources{
-		Jobs: map[string]*resources.Job{
-			"foo": {
-				Paths: paths.Paths{
-					ConfigFilePath: "foo.yml",
-				},
-			},
-		},
-		RegisteredModels: map[string]*resources.RegisteredModel{
-			"bar": {
-				Paths: paths.Paths{
-					ConfigFilePath: "bar.yml",
-				},
-			},
-		},
-	}
-	other := Resources{
-		RegisteredModels: map[string]*resources.RegisteredModel{
-			"bar": {
-				Paths: paths.Paths{
-					ConfigFilePath: "bar2.yml",
-				},
-			},
-		},
-	}
-	err := r.VerifySafeMerge(&other)
-	assert.ErrorContains(t, err, "multiple resources named bar (registered_model at bar.yml, registered_model at bar2.yml)")
-}
diff --git a/bundle/config/root.go b/bundle/config/root.go
index fda3759d..6a6daf46 100644
--- a/bundle/config/root.go
+++ b/bundle/config/root.go
@@ -97,7 +97,8 @@ func Load(path string) (*Root, diag.Diagnostics) {
 		return nil, diag.Errorf("failed to load %s: %v", path, err)
 	}
 
-	_, err = r.Resources.VerifyUniqueResourceIdentifiers()
+	// Error if there are duplicate resource identifiers in the config file.
+	_, err = r.gatherResourceIdentifiers()
 	if err != nil {
 		diags = diags.Extend(diag.FromErr(err))
 	}
@@ -265,7 +266,7 @@ func (r *Root) InitializeVariables(vars []string) error {
 
 func (r *Root) Merge(other *Root) error {
 	// Check for safe merge, protecting against duplicate resource identifiers
-	err := r.Resources.VerifySafeMerge(&other.Resources)
+	err := r.verifySafeMerge(*other)
 	if err != nil {
 		return err
 	}
@@ -463,3 +464,84 @@ func (r Root) GetLocation(path string) dyn.Location {
 	}
 	return v.Location()
 }
+
+// This function verifies that the merge of two Root objects is safe. It checks
+// there will be no duplicate resource identifiers in the merged configuration.
+func (r Root) verifySafeMerge(other Root) error {
+	paths, err := r.gatherResourceIdentifiers()
+	if err != nil {
+		return err
+	}
+
+	otherPaths, err := other.gatherResourceIdentifiers()
+	if err != nil {
+		return err
+	}
+
+	// If duplicate keys exist, return
+	for k, p := range paths {
+		if _, ok := otherPaths[k]; ok {
+			// Type and location of the existing resource in the map.
+			ot := strings.TrimSuffix(paths[k][0].Key(), "s")
+			ov, _ := dyn.GetByPath(r.value.Get("resources"), paths[k])
+			ol := ov.Location()
+
+			// Type and location of the newly encountered resource with a duplicate name.
+			nt := strings.TrimSuffix(p[0].Key(), "s")
+			nv, _ := dyn.GetByPath(r.value.Get("resources"), p)
+			nl := nv.Location()
+
+			// Error, encountered a duplicate resource identifier.
+			return fmt.Errorf("multiple resources named %s (%s at %v, %s at %v)", k, ot, ol, nt, nl)
+		}
+	}
+	return nil
+}
+
+// This function gathers the resource identifiers, which exist in the bundle configuration
+// in the form: resources.<resource_type>.<resource_identifiers>.
+//
+// It returns an error if it encounters a duplicate resource identifiers.
+//
+// Otherwise it returns a map of resource identifiers to their paths in the configuration tree
+// relative to the resources key.
+func (r Root) gatherResourceIdentifiers() (map[string]dyn.Path, error) {
+	paths := make(map[string]dyn.Path)
+	rrv := r.value.Get("resources")
+
+	// Walk the resources tree and accumulate the resource identifiers.
+	_, err := dyn.Walk(rrv, func(p dyn.Path, v dyn.Value) (dyn.Value, error) {
+		// The path is expected to be of length 2, and of the form <resource_type>.<resource_identifier>.
+		// Eg: jobs.my_job, pipelines.my_pipeline, etc.
+		if len(p) < 2 {
+			return v, nil
+		}
+		if len(p) > 2 {
+			return v, dyn.ErrSkip
+		}
+
+		// TODO: Add validation that the resource is a map.
+
+		// If the resource identifier already exists in the map, return an error.
+		k := p[1].Key()
+		if _, ok := paths[k]; ok {
+			// Type and location of the existing resource in the map.
+			ot := strings.TrimSuffix(paths[k][0].Key(), "s")
+			ov, _ := dyn.GetByPath(rrv, paths[k])
+			ol := ov.Location()
+
+			// Type and location of the newly encountered with a duplicate name.
+			nt := strings.TrimSuffix(p[0].Key(), "s")
+			nv, _ := dyn.GetByPath(rrv, p)
+			nl := nv.Location()
+
+			// Error, encountered a duplicate resource identifier.
+			return v, fmt.Errorf("multiple resources named %s (%s at %v, %s at %v)", k, ot, ol, nt, nl)
+		}
+
+		// Accumulate the resource identifier and its path.
+		paths[k] = p
+		return v, nil
+	})
+	return paths, err
+}
diff --git a/bundle/config/root_test.go b/bundle/config/root_test.go
index b5676884..a6a1cdce 100644
--- a/bundle/config/root_test.go
+++ b/bundle/config/root_test.go
@@ -30,12 +30,17 @@ func TestRootLoad(t *testing.T) {
 	assert.Equal(t, "basic", root.Bundle.Name)
 }
 
-func TestDuplicateIdOnLoadReturnsError(t *testing.T) {
-	_, diags := Load("./testdata/duplicate_resource_names_in_root/databricks.yml")
-	assert.ErrorContains(t, diags.Error(), "multiple resources named foo (job at ./testdata/duplicate_resource_names_in_root/databricks.yml, pipeline at ./testdata/duplicate_resource_names_in_root/databricks.yml)")
+func TestDuplicateIdOnLoadReturnsErrorForJobAndPipeline(t *testing.T) {
+	_, diags := Load("./testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml")
+	assert.ErrorContains(t, diags.Error(), "multiple resources named foo (job at ./testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml:10:7, pipeline at ./testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml:15:7)")
 }
 
-func TestDuplicateIdOnMergeReturnsError(t *testing.T) {
+func TestDuplicateIdOnLoadReturnsErrorForJobsAndExperiments(t *testing.T) {
+	_, diags := Load("./testdata/duplicate_resource_names_in_root_job_and_experiment/databricks.yml")
+	assert.ErrorContains(t, diags.Error(), "multiple resources named foo (job at ./testdata/duplicate_resource_names_in_root_jobs_and_experiments/databricks.yml:10:7, experiment at ./testdata/duplicate_resource_names_in_root_jobs_and_experiments/databricks.yml:18:7)")
+}
+
+func TestDuplicateIdOnMergeReturnsErrorForJobAndPipeline(t *testing.T) {
 	root, diags := Load("./testdata/duplicate_resource_name_in_subconfiguration/databricks.yml")
 	require.NoError(t, diags.Error())
 
@@ -43,7 +48,18 @@ func TestDuplicateIdOnMergeReturnsError(t *testing.T) {
 	require.NoError(t, diags.Error())
 
 	err := root.Merge(other)
-	assert.ErrorContains(t, err, "multiple resources named foo (job at ./testdata/duplicate_resource_name_in_subconfiguration/databricks.yml, pipeline at ./testdata/duplicate_resource_name_in_subconfiguration/resources.yml)")
+	assert.ErrorContains(t, err, "multiple resources named foo (job at ./testdata/duplicate_resource_name_in_subconfiguration/databricks.yml:10:7, job at ./testdata/duplicate_resource_name_in_subconfiguration/databricks.yml:10:7)")
+}
+
+func TestDuplicateIdOnMergeReturnsErrorForJobAndJob(t *testing.T) {
+	root, diags := Load("./testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml")
+	require.NoError(t, diags.Error())
+
+	other, diags := Load("./testdata/duplicate_resource_name_in_subconfiguration_job_and_job/resources.yml")
+	require.NoError(t, diags.Error())
+
+	err := root.Merge(other)
+	assert.ErrorContains(t, err, "multiple resources named foo (job at ./testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml:10:7, job at ./testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml:10:7)")
 }
 
 func TestInitializeVariables(t *testing.T) {
diff --git a/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml b/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml
new file mode 100644
index 00000000..a8160292
--- /dev/null
+++ b/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/databricks.yml
@@ -0,0 +1,10 @@
+bundle:
+  name: test
+
+workspace:
+  profile: test
+
+resources:
+  jobs:
+    foo:
+      name: job foo
diff --git a/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/resources.yml b/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/resources.yml
new file mode 100644
index 00000000..f644bc84
--- /dev/null
+++ b/bundle/config/testdata/duplicate_resource_name_in_subconfiguration_job_and_job/resources.yml
@@ -0,0 +1,4 @@
+resources:
+  jobs:
+    foo:
+      name: pipeline foo
diff --git a/bundle/config/testdata/duplicate_resource_names_in_root_job_and_experiment/databricks.yml b/bundle/config/testdata/duplicate_resource_names_in_root_job_and_experiment/databricks.yml
new file mode 100644
index 00000000..d286f104
--- /dev/null
+++ b/bundle/config/testdata/duplicate_resource_names_in_root_job_and_experiment/databricks.yml
@@ -0,0 +1,18 @@
+bundle:
+  name: test
+
+workspace:
+  profile: test
+
+resources:
+  jobs:
+    foo:
+      name: job foo
+    bar:
+      name: job bar
+  pipelines:
+    baz:
+      name: pipeline baz
+  experiments:
+    foo:
+      name: experiment foo
diff --git a/bundle/config/testdata/duplicate_resource_names_in_root/databricks.yml b/bundle/config/testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml
similarity index 69%
rename from bundle/config/testdata/duplicate_resource_names_in_root/databricks.yml
rename to bundle/config/testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml
index 1e9aa10b..9189fe4e 100644
--- a/bundle/config/testdata/duplicate_resource_names_in_root/databricks.yml
+++ b/bundle/config/testdata/duplicate_resource_names_in_root_job_and_pipeline/databricks.yml
@@ -8,6 +8,10 @@ resources:
   jobs:
     foo:
       name: job foo
+    bar:
+      name: job bar
   pipelines:
     foo:
       name: pipeline foo
+    baz:
+      name: pipeline baz