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""" This notebook is designed to generate SQL syntax all the quasi-identifiers for the patients in the database The resulting SQL will be run against bigquery to produce a table with every record mapping to a patient """ from risk import * ihandle = UtilHandler(path='/home/steve/dev/google-cloud-sdk/accounts/curation-prod.json',dataset='combined20180822',key_field='person_id',key_table='person',filter=['person','observation']) r = ihandle.migrate_tables() len(r)
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In [11]:
ihandle = UtilHandler(path='/home/steve/dev/google-cloud-sdk/accounts/curation-test.json',dataset='deid_image',key_field='person_id',key_table='person',filter=['person','basic_observation']) ihandle.create_table().replace('\n',' ')
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u' SELECT person.person_id , person.year_of_birth , person.month_of_birth , person.day_of_birth , person.birth_datetime , person.race_concept_id , person.ethnicity_concept_id , person.location_id , person.care_site_id , person.person_source_value , person.gender_source_value , person.gender_source_concept_id , person.race_source_value , person.ethnicity_source_value , basic_observation.sex_at_birth AS sex_at_birth1 , basic_observation.birth_date AS birth_date1 , basic_observation.race AS race1 , basic_observation.zip AS zip1 , basic_observation.city AS city1 , basic_observation.state AS state1 , basic_observation.gender AS gender1 FROM (select * from deid_image.person ) as person INNER JOIN (select * from deid_image.basic_observation ) as basic_observation ON basic_observation.person_id = person.person_id '
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