2019-08-28 15:02:47 +00:00
|
|
|
|
<!DOCTYPE html>
|
|
|
|
|
|
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<html>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
<head>
|
|
|
|
|
|
|
|
|
|
|
|
<meta charset="utf-8" />
|
|
|
|
|
|
<meta name="generator" content="pandoc" />
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<title> OMOP Common Data Model</title>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<script src="site_libs/header-attrs-2.25/header-attrs.js"></script>
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<meta name="viewport" content="width=device-width, initial-scale=1" />
|
|
|
|
|
|
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
|
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
|
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
|
|
|
|
|
|
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<style>h1 {font-size: 34px;}
|
|
|
|
|
|
h1.title {font-size: 38px;}
|
|
|
|
|
|
h2 {font-size: 30px;}
|
|
|
|
|
|
h3 {font-size: 24px;}
|
|
|
|
|
|
h4 {font-size: 18px;}
|
|
|
|
|
|
h5 {font-size: 16px;}
|
|
|
|
|
|
h6 {font-size: 12px;}
|
|
|
|
|
|
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
|
|
|
|
|
|
pre:not([class]) { background-color: white }</style>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<script src="site_libs/navigation-1.1/tabsets.js"></script>
|
|
|
|
|
|
<link href="site_libs/highlightjs-9.12.0/default.css" rel="stylesheet" />
|
|
|
|
|
|
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<script src="site_libs/htmlwidgets-1.6.2/htmlwidgets.js"></script>
|
|
|
|
|
|
<script src="site_libs/calendar-binding-0.3.0/calendar.js"></script>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<link href="site_libs/bttn-0.2.4/bttn.min.css" rel="stylesheet" />
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
|
|
|
|
|
|
<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<link rel='shortcut icon' type='image/x-icon' href='favicon.ico' />
|
|
|
|
|
|
|
2021-01-06 15:52:57 +00:00
|
|
|
|
<style type="text/css">
|
|
|
|
|
|
code{white-space: pre-wrap;}
|
|
|
|
|
|
span.smallcaps{font-variant: small-caps;}
|
|
|
|
|
|
span.underline{text-decoration: underline;}
|
|
|
|
|
|
div.column{display: inline-block; vertical-align: top; width: 50%;}
|
|
|
|
|
|
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
|
|
|
|
|
ul.task-list{list-style: none;}
|
|
|
|
|
|
</style>
|
|
|
|
|
|
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<style type="text/css">code{white-space: pre;}</style>
|
|
|
|
|
|
<script type="text/javascript">
|
|
|
|
|
|
if (window.hljs) {
|
|
|
|
|
|
hljs.configure({languages: []});
|
|
|
|
|
|
hljs.initHighlightingOnLoad();
|
|
|
|
|
|
if (document.readyState && document.readyState === "complete") {
|
|
|
|
|
|
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
|
|
|
|
|
|
}
|
|
|
|
|
|
}
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2021-01-06 15:52:57 +00:00
|
|
|
|
|
2022-04-22 19:12:19 +00:00
|
|
|
|
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<link rel="stylesheet" href="style.css" type="text/css" />
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<style type = "text/css">
|
|
|
|
|
|
.main-container {
|
|
|
|
|
|
max-width: 940px;
|
|
|
|
|
|
margin-left: auto;
|
|
|
|
|
|
margin-right: auto;
|
|
|
|
|
|
}
|
|
|
|
|
|
img {
|
|
|
|
|
|
max-width:100%;
|
|
|
|
|
|
}
|
|
|
|
|
|
.tabbed-pane {
|
|
|
|
|
|
padding-top: 12px;
|
|
|
|
|
|
}
|
|
|
|
|
|
.html-widget {
|
|
|
|
|
|
margin-bottom: 20px;
|
|
|
|
|
|
}
|
|
|
|
|
|
button.code-folding-btn:focus {
|
|
|
|
|
|
outline: none;
|
|
|
|
|
|
}
|
|
|
|
|
|
summary {
|
|
|
|
|
|
display: list-item;
|
|
|
|
|
|
}
|
2022-04-22 19:12:19 +00:00
|
|
|
|
details > summary > p:only-child {
|
|
|
|
|
|
display: inline;
|
|
|
|
|
|
}
|
2022-01-13 16:01:36 +00:00
|
|
|
|
pre code {
|
|
|
|
|
|
padding: 0;
|
|
|
|
|
|
}
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</style>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
|
.dropdown-submenu {
|
|
|
|
|
|
position: relative;
|
|
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu>.dropdown-menu {
|
|
|
|
|
|
top: 0;
|
|
|
|
|
|
left: 100%;
|
|
|
|
|
|
margin-top: -6px;
|
|
|
|
|
|
margin-left: -1px;
|
|
|
|
|
|
border-radius: 0 6px 6px 6px;
|
|
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu:hover>.dropdown-menu {
|
|
|
|
|
|
display: block;
|
|
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu>a:after {
|
|
|
|
|
|
display: block;
|
|
|
|
|
|
content: " ";
|
|
|
|
|
|
float: right;
|
|
|
|
|
|
width: 0;
|
|
|
|
|
|
height: 0;
|
|
|
|
|
|
border-color: transparent;
|
|
|
|
|
|
border-style: solid;
|
|
|
|
|
|
border-width: 5px 0 5px 5px;
|
|
|
|
|
|
border-left-color: #cccccc;
|
|
|
|
|
|
margin-top: 5px;
|
|
|
|
|
|
margin-right: -10px;
|
|
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu:hover>a:after {
|
2022-01-13 16:01:36 +00:00
|
|
|
|
border-left-color: #adb5bd;
|
2019-08-28 15:02:47 +00:00
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu.pull-left {
|
|
|
|
|
|
float: none;
|
|
|
|
|
|
}
|
|
|
|
|
|
.dropdown-submenu.pull-left>.dropdown-menu {
|
|
|
|
|
|
left: -100%;
|
|
|
|
|
|
margin-left: 10px;
|
|
|
|
|
|
border-radius: 6px 0 6px 6px;
|
|
|
|
|
|
}
|
|
|
|
|
|
</style>
|
|
|
|
|
|
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<script type="text/javascript">
|
2019-08-28 15:02:47 +00:00
|
|
|
|
// manage active state of menu based on current page
|
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
|
// active menu anchor
|
|
|
|
|
|
href = window.location.pathname
|
|
|
|
|
|
href = href.substr(href.lastIndexOf('/') + 1)
|
|
|
|
|
|
if (href === "")
|
|
|
|
|
|
href = "index.html";
|
|
|
|
|
|
var menuAnchor = $('a[href="' + href + '"]');
|
|
|
|
|
|
|
2023-01-03 19:23:06 +00:00
|
|
|
|
// mark the anchor link active (and if it's in a dropdown, also mark that active)
|
|
|
|
|
|
var dropdown = menuAnchor.closest('li.dropdown');
|
|
|
|
|
|
if (window.bootstrap) { // Bootstrap 4+
|
|
|
|
|
|
menuAnchor.addClass('active');
|
|
|
|
|
|
dropdown.find('> .dropdown-toggle').addClass('active');
|
|
|
|
|
|
} else { // Bootstrap 3
|
|
|
|
|
|
menuAnchor.parent().addClass('active');
|
|
|
|
|
|
dropdown.addClass('active');
|
|
|
|
|
|
}
|
2022-01-13 16:01:36 +00:00
|
|
|
|
|
|
|
|
|
|
// Navbar adjustments
|
|
|
|
|
|
var navHeight = $(".navbar").first().height() + 15;
|
|
|
|
|
|
var style = document.createElement('style');
|
|
|
|
|
|
var pt = "padding-top: " + navHeight + "px; ";
|
|
|
|
|
|
var mt = "margin-top: -" + navHeight + "px; ";
|
|
|
|
|
|
var css = "";
|
|
|
|
|
|
// offset scroll position for anchor links (for fixed navbar)
|
|
|
|
|
|
for (var i = 1; i <= 6; i++) {
|
|
|
|
|
|
css += ".section h" + i + "{ " + pt + mt + "}\n";
|
|
|
|
|
|
}
|
|
|
|
|
|
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
|
|
|
|
|
|
document.head.appendChild(style);
|
2019-08-28 15:02:47 +00:00
|
|
|
|
});
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
|
|
<!-- tabsets -->
|
|
|
|
|
|
|
|
|
|
|
|
<style type="text/css">
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs {
|
|
|
|
|
|
display: inline-table;
|
|
|
|
|
|
max-height: 500px;
|
|
|
|
|
|
min-height: 44px;
|
|
|
|
|
|
overflow-y: auto;
|
|
|
|
|
|
border: 1px solid #ddd;
|
|
|
|
|
|
border-radius: 4px;
|
|
|
|
|
|
}
|
|
|
|
|
|
|
2023-10-26 18:13:30 +00:00
|
|
|
|
.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
|
|
|
|
|
|
content: "\e259";
|
2019-08-28 15:02:47 +00:00
|
|
|
|
font-family: 'Glyphicons Halflings';
|
|
|
|
|
|
display: inline-block;
|
|
|
|
|
|
padding: 10px;
|
|
|
|
|
|
border-right: 1px solid #ddd;
|
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
|
2023-10-26 18:13:30 +00:00
|
|
|
|
content: "\e258";
|
2019-08-28 15:02:47 +00:00
|
|
|
|
font-family: 'Glyphicons Halflings';
|
2023-10-26 18:13:30 +00:00
|
|
|
|
border: none;
|
2019-08-28 15:02:47 +00:00
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li.active {
|
|
|
|
|
|
display: block;
|
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a,
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a:focus,
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li > a:hover {
|
|
|
|
|
|
border: none;
|
|
|
|
|
|
display: inline-block;
|
|
|
|
|
|
border-radius: 4px;
|
2020-04-27 20:35:41 +00:00
|
|
|
|
background-color: transparent;
|
2019-08-28 15:02:47 +00:00
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
|
|
|
|
|
|
display: block;
|
|
|
|
|
|
float: none;
|
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
.tabset-dropdown > .nav-tabs > li {
|
|
|
|
|
|
display: none;
|
|
|
|
|
|
}
|
|
|
|
|
|
</style>
|
|
|
|
|
|
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<!-- code folding -->
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2020-04-27 20:35:41 +00:00
|
|
|
|
</head>
|
|
|
|
|
|
|
|
|
|
|
|
<body>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="container-fluid main-container">
|
|
|
|
|
|
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
|
|
|
|
|
<div class="container">
|
|
|
|
|
|
<div class="navbar-header">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
|
<span class="icon-bar"></span>
|
|
|
|
|
|
</button>
|
|
|
|
|
|
<a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP Common Data Model </div></a>
|
|
|
|
|
|
</div>
|
|
|
|
|
|
<div id="navbar" class="navbar-collapse collapse">
|
|
|
|
|
|
<ul class="nav navbar-nav">
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="index.html">
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<span class="fa fa-house"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
</a>
|
|
|
|
|
|
</li>
|
2021-02-19 02:37:32 +00:00
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-landmark"></span>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
|
|
|
|
|
|
Background
|
2021-02-19 02:37:32 +00:00
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
</a>
|
2021-02-19 02:37:32 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="background.html">Model Background</a>
|
|
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdmRefreshProcess.html">CDM Refresh Process</a>
|
|
|
|
|
|
</li>
|
2021-02-19 02:37:32 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="vocabulary.html">How the Vocabulary is Built</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-list-alt"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
Conventions
|
2021-09-22 19:39:44 +00:00
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</a>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="dataModelConventions.html">General Conventions</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="ehrObsPeriods.html">Observation Periods for EHR Data</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdmPrivacy.html">Patient Privacy and OMOP</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-history"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
CDM Versions
|
|
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
|
</a>
|
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
2021-02-19 02:37:32 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdm30.html">CDM v3.0</a>
|
|
|
|
|
|
</li>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="cdm60.html">CDM v6.0</a>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="cdm53.html">CDM v5.3</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
<li class="dropdown-submenu">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">NEW CDM v5.4</a>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdm54.html">CDM v5.4</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdm54Changes.html">Changes from CDM v5.3</a>
|
|
|
|
|
|
</li>
|
2023-02-21 13:52:45 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdm54erd.html">Entity Relationships</a>
|
|
|
|
|
|
</li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
</ul>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
|
|
|
|
|
</li>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-plus-square"></span>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
|
2022-07-27 01:48:28 +00:00
|
|
|
|
CDM Proposals
|
2019-10-31 19:06:09 +00:00
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
|
|
|
|
|
</a>
|
|
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
2022-07-27 01:48:28 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdmRequestProcess.html">How to Propose Changes to the CDM</a>
|
|
|
|
|
|
</li>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal">Under Review</a>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
<li class="dropdown-submenu">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Accepted</a>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel/issues/252">Region_concept_id</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
|
|
|
|
|
</li>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-question"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
2021-09-22 19:39:44 +00:00
|
|
|
|
How to
|
2020-10-06 15:11:13 +00:00
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</a>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
|
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="download.html">Download the DDL</a>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="cdmRPackage.html">Use the CDM R Package</a>
|
|
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
|
|
|
|
|
<a href="drug_dose.html">Calculate Drug Dose</a>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</li>
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<li class="dropdown">
|
2022-04-22 19:12:19 +00:00
|
|
|
|
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-life-ring"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
2021-09-22 19:39:44 +00:00
|
|
|
|
Support
|
2020-04-27 20:35:41 +00:00
|
|
|
|
|
|
|
|
|
|
<span class="caret"></span>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</a>
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<ul class="dropdown-menu" role="menu">
|
2022-07-27 01:48:28 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="cdmDecisionTree.html">Help! My Data Doesn't Fit!</a>
|
|
|
|
|
|
</li>
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="faq.html">FAQ</a>
|
2020-04-27 20:35:41 +00:00
|
|
|
|
</li>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="sqlScripts.html">SQL Scripts</a>
|
2020-10-06 15:11:13 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
<li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<a href="contribute.html">Ask a Question</a>
|
2020-04-27 20:35:41 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</li>
|
|
|
|
|
|
</ul>
|
|
|
|
|
|
<ul class="nav navbar-nav navbar-right">
|
2019-10-31 19:06:09 +00:00
|
|
|
|
<li>
|
|
|
|
|
|
<a href="https://github.com/OHDSI/CommonDataModel">
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<span class="fa fa-github"></span>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
|
|
|
|
|
|
</a>
|
|
|
|
|
|
</li>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</ul>
|
|
|
|
|
|
</div><!--/.nav-collapse -->
|
|
|
|
|
|
</div><!--/.container -->
|
|
|
|
|
|
</div><!--/.navbar -->
|
|
|
|
|
|
|
2022-01-13 16:01:36 +00:00
|
|
|
|
<div id="header">
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<h1 class="title toc-ignore"><img src="ohdsi40x40.png"></img> OMOP
|
|
|
|
|
|
Common Data Model</h1>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
|
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<p>The Observational Medical Outcomes Partnership (OMOP) Common Data
|
|
|
|
|
|
Model (CDM) is an open community data standard, designed to standardize
|
|
|
|
|
|
the structure and content of observational data and to enable efficient
|
|
|
|
|
|
analyses that can produce reliable evidence. A central component of the
|
|
|
|
|
|
OMOP CDM is the OHDSI standardized vocabularies. The OHDSI vocabularies
|
|
|
|
|
|
allow organization and standardization of medical terms to be used
|
|
|
|
|
|
across the various clinical domains of the OMOP common data model and
|
|
|
|
|
|
enable standardized analytics that leverage the knowledge base when
|
|
|
|
|
|
constructing exposure and outcome phenotypes and other features within
|
|
|
|
|
|
characterization, population-level effect estimation, and patient-level
|
|
|
|
|
|
prediction studies.</p>
|
|
|
|
|
|
<p>This website is meant to serve as a resource describing the
|
|
|
|
|
|
specification of the available versions of the Common Data Model. This
|
|
|
|
|
|
includes the structure of the model itself and the agreed upon
|
|
|
|
|
|
conventions for each table and field as decided by the OHDSI Community.
|
|
|
|
|
|
The vocabulary tables are part of the model and, as such, are detailed
|
|
|
|
|
|
here. To download the vocabulary itself, please visit <a
|
|
|
|
|
|
href="https://athena.ohdsi.org">https://athena.ohdsi.org</a>. For more
|
|
|
|
|
|
information about the OHDSI suite of tools designed to implement best
|
|
|
|
|
|
practices in characterization, population-level effect estimation and
|
|
|
|
|
|
patient-level prediction, please visit <a
|
|
|
|
|
|
href="https://ohdsi.github.io/Hades/">https://ohdsi.github.io/Hades/</a>.</p>
|
|
|
|
|
|
<div id="the-cdm-working-group" class="section level2">
|
|
|
|
|
|
<h2>The CDM Working Group</h2>
|
|
|
|
|
|
<p>The CDM is managed by the OHDSI CDM Working Group. If you would like
|
|
|
|
|
|
to join our group please fill out <a
|
|
|
|
|
|
href="https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu">this
|
|
|
|
|
|
form</a> and check “Common Data Model” to be added to our Microsoft
|
|
|
|
|
|
Teams environment. This working group endeavors to maintain the OMOP CDM
|
|
|
|
|
|
as a living model by soliciting and responding to requests from the
|
|
|
|
|
|
community based on use cases and research purposes. For more information
|
|
|
|
|
|
on the CDM refresh process please see the description <a
|
|
|
|
|
|
href="http://ohdsi.github.io/CommonDataModel/cdmRefreshProcess.html">here</a>.
|
|
|
|
|
|
You will find information on our meetings and links to join at the end
|
|
|
|
|
|
of this page.</p>
|
|
|
|
|
|
<div id="calendar" class="section level3">
|
|
|
|
|
|
<h3>Calendar</h3>
|
|
|
|
|
|
<p>This is the calendar of events for the CDM Working Group, including
|
|
|
|
|
|
upcoming topics and links to meetings. If you would like to present to
|
|
|
|
|
|
the group regarding a new use case for the OMOP CDM or if you would like
|
|
|
|
|
|
the group’s assistance with a problem you are having, please fill out
|
|
|
|
|
|
our sign-up form.</p>
|
|
|
|
|
|
<p><a
|
|
|
|
|
|
href="https://www.signupgenius.com/go/10C0948AEAD28A4F9CF8-workgroup"><img
|
|
|
|
|
|
src="images/sign-up.png" style="width:15.0%" alt="Sign Up" /></a></p>
|
|
|
|
|
|
<p><strong>Note</strong> If you do you have access to the OHDSI Teams
|
|
|
|
|
|
Tenet, either contact Clair Blacketer at <a
|
|
|
|
|
|
href="mailto:mblacke@its.jnj.com" class="email">mblacke@its.jnj.com</a>
|
|
|
|
|
|
or fill out <a
|
|
|
|
|
|
href="https://forms.office.com/Pages/ResponsePage.aspx?id=lAAPoyCRq0q6TOVQkCOy1ZyG6Ud_r2tKuS0HcGnqiQZUOVJFUzBFWE1aSVlLN0ozR01MUVQ4T0RGNyQlQCN0PWcu">this
|
|
|
|
|
|
form</a> and check “Common Data Model”</p>
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<div class="toastui-calendar calendar html-widget html-fill-item-overflow-hidden html-fill-item" style="width:100%;height:600px;">
|
|
|
|
|
|
<div id="htmlwidget-d348e9da037f877b022a_menu">
|
|
|
|
|
|
<span id="htmlwidget-d348e9da037f877b022a_menu_navi">
|
|
|
|
|
|
<button type="button" class="btn bttn-no-outline action-button" id="htmlwidget-d348e9da037f877b022a_today">Today</button>
|
|
|
|
|
|
<button type="button" class="btn bttn-no-outline action-button" id="htmlwidget-d348e9da037f877b022a_prev">
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<i class="fa fa-chevron-left"></i>
|
|
|
|
|
|
</button>
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<button type="button" class="btn bttn-no-outline action-button" id="htmlwidget-d348e9da037f877b022a_next">
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<i class="fa fa-chevron-right"></i>
|
|
|
|
|
|
</button>
|
|
|
|
|
|
</span>
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<span id="htmlwidget-d348e9da037f877b022a_renderRange" class="render-range"></span>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
</div>
|
|
|
|
|
|
<br/>
|
2023-10-26 18:13:30 +00:00
|
|
|
|
<div id="htmlwidget-d348e9da037f877b022a" style="width:100%;height:600px;" class="calendar html-widget html-fill-item-overflow-hidden" width="100%" height="600px"></div>
|
|
|
|
|
|
</div>
|
|
|
|
|
|
<script type="application/json" data-for="htmlwidget-d348e9da037f877b022a">{"x":{"options":{"defaultView":"month","useDetailPopup":true,"useFormPopup":false,"isReadOnly":true,"usageStatistics":false,"month":{"startDayOfWeek":1,"narrowWeekend":true},"calendars":[{"id":"1","name":"PERSO","color":"#000","backgroundColor":"#c6d19d","borderColor":"forestgreen"},{"id":"2","name":"WORK","color":"#000","backgroundColor":"#F5A9A9","borderColor":"firebrick"},{"id":"3","name":"COURSES","color":"#000","backgroundColor":"#c6e2f6","borderColor":"#3b7cc6"}]},"schedules":[{"category":"time","dueDateClass":"","id":"schedule942b1418b7511cb418fa1ec9","calendarId":"1","title":"CDM WG Meeting","body":"","recurrenceRule":null,"start":"2023-01-03 10:00:00","end":"2023-01-03 11:00:00","location":"Teams: https://tinyurl.com/cdm1sttues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedule51ac9e4658026286c085288d","calendarId":"2","title":"CDM WG : Pregnancy","body":"The Pregnancy and Maternal Medicine working group will present.","recurrenceRule":null,"start":"2023-01-17 13:00:00","end":"2023-01-17 14:00:00","location":"Teams: https://tinyurl.com/cdm3rdtues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedulea087c90381fecb3702972493","calendarId":"1","title":"CDM WG Meeting : NLP","body":"The NLP working group will present some potential updates to the NOTE_NLP table.","recurrenceRule":null,"start":"2023-02-07 10:00:00","end":"2023-02-07 11:00:00","location":"Teams: https://tinyurl.com/cdm1sttues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedule4729e4d6462d42e5c6443f6e","calendarId":"2","title":"CDM WG Vocabulary Discussion","body":"Anna Ostropolets will join to ask us about our experiences using the OMOP Standard Vocabulary for ETL and other purposes","recurrenceRule":null,"start":"2023-02-21 13:00:00","end":"2023-02-21 14:00:00","location":"Teams: https://tinyurl.com/cdm3rdtues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedulecb906adeb81ad1a7ad67807c","calendarId":"1","title":"CDM WG : HADES","body":"Martijn Schuemie will present about the HADES working group and how their work interconnects with the OMOP CDM","recurrenceRule":null,"start":"2023-03-07 9:00:00","end":"2023-03-07 10:00:00","location":"Teams: https://tinyurl.com/cdm1sttues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedulef1455446df6cb648ad13af41","calendarId":"2","title":"CDM WG : Medical Imaging","body":"Paul Nagy will talk to us about the modeling work being done in the Medical Imaging working group","recurrenceRule":null,"start":"2023-03-21 13:00:00","end":"2023-03-21 14:00:00","location":"Teams: https://tinyurl.com/cdm3rdtues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"scheduleb3b0074f6f6853c7dbe89bdc","calendarId":"1","title":"CDM WG Meeting","body":"","recurrenceRule":null,"start":"2023-04-04 10:00:00","end":"2023-04-04 11:00:00","location":"Teams: https://tinyurl.com/cdm1sttues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedule6a4ff3e91681e47ff1350339","calendarId":"2","title":"CDM WG : GIS","body":"The GIS working group will join us to share what they are working on and how we might support them.","recurrenceRule":null,"start":"2023-04-18 13:00:00","end":"2023-04-18 14:00:00","location":"Teams: https://tinyurl.com/cdm3rdtues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"scheduleb24a6d5358a44a317178a7b4","calendarId":"1","title":"CDM WG Meeting","body":"","recurrenceRule":null,"start":"2023-05-02 10:00:00","end":"2023-05-02 11:00:00","location":"Teams: https://tinyurl.com/cdm1sttues","bgColor":null,"color":null,"borderColor":null},{"category":"time","dueDateClass":"","id":"schedule7c62aebfab4c4ca9ede793d2","calendarId":"2","title":"CDM WG Meeting","body":"","recurrenceRule":null,"start":"
|
2023-01-03 19:23:06 +00:00
|
|
|
|
</div>
|
|
|
|
|
|
</div>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<div id="current-cdm-version" class="section level2">
|
|
|
|
|
|
<h2>Current CDM Version</h2>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<p>The current CDM version is <a
|
|
|
|
|
|
href="http://ohdsi.github.io/CommonDataModel/cdm54.html">CDM v5.4</a>,
|
|
|
|
|
|
depicted below. This CDM version was developed over the course of a year
|
|
|
|
|
|
by considering requests that were sent via our <a
|
|
|
|
|
|
href="https://github.com/OHDSI/CommonDataModel/issues">issues page</a>.
|
|
|
|
|
|
The list of proposed changes was then shared with the community in
|
|
|
|
|
|
multiple ways: through discussions at the weekly OHDSI Community calls,
|
|
|
|
|
|
discussions with the OHDSI Steering Committee, and discussions with all
|
|
|
|
|
|
potentially affected workgroups. The <a
|
|
|
|
|
|
href="http://ohdsi.github.io/CommonDataModel/cdm54Changes.html">final
|
|
|
|
|
|
changes</a> were then delivered to the Community through a new R package
|
|
|
|
|
|
designed to dynamically generate the DDLs and documentation for all
|
2023-02-21 13:52:45 +00:00
|
|
|
|
supported SQL dialects. Looking for an entity-relationshop diagram?
|
|
|
|
|
|
Click <a
|
|
|
|
|
|
href="http://ohdsi.github.io/CommonDataModel/cdm54erd.html">here</a>!</p>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
<ul>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<li><a
|
|
|
|
|
|
href="https://github.com/OHDSI/CommonDataModel/tree/v5.4.0/inst/ddl/5.4">Link
|
|
|
|
|
|
to DDLs for CDM v5.4</a></li>
|
|
|
|
|
|
<li><a
|
|
|
|
|
|
href="https://github.com/OHDSI/CommonDataModel/tree/master#readme">Link
|
|
|
|
|
|
to ReadMe for instructions on how to use the R package</a></li>
|
2021-09-22 19:39:44 +00:00
|
|
|
|
</ul>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
<p><img src="images/cdm54.png" /> <br></p>
|
|
|
|
|
|
<div id="current-support-for-cdm-v5.4" class="section level3">
|
|
|
|
|
|
<h3>Current Support for CDM v5.4</h3>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<p>The table below details which OHDSI tools support CDM v5.4. There are
|
|
|
|
|
|
two levels of support: legacy support means that the tool supports all
|
|
|
|
|
|
tables and fields that were present in CDM v5.3 and feature support
|
|
|
|
|
|
indicates that the tool supports any new tables and fields in CDM v5.4
|
|
|
|
|
|
that were not present in CDM v5.3. A green check ✅ indicates that the
|
|
|
|
|
|
support level for the listed tool is in place, has been tested, and
|
|
|
|
|
|
released. A warning sign ⚠️ indicates that the support level for the
|
|
|
|
|
|
listed tool has been initiated but has not yet been tested and released.
|
|
|
|
|
|
<br></p>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
<table>
|
|
|
|
|
|
<colgroup>
|
|
|
|
|
|
<col width="25%" />
|
|
|
|
|
|
<col width="25%" />
|
|
|
|
|
|
<col width="25%" />
|
|
|
|
|
|
<col width="25%" />
|
|
|
|
|
|
</colgroup>
|
|
|
|
|
|
<thead>
|
|
|
|
|
|
<tr class="header">
|
|
|
|
|
|
<th><strong>Tool</strong></th>
|
|
|
|
|
|
<th><strong>Description</strong></th>
|
|
|
|
|
|
<th><strong>Legacy Support</strong></th>
|
|
|
|
|
|
<th><strong>Feature Support</strong></th>
|
|
|
|
|
|
</tr>
|
|
|
|
|
|
</thead>
|
|
|
|
|
|
<tbody>
|
|
|
|
|
|
<tr class="odd">
|
|
|
|
|
|
<td><strong>CDM R package</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/CommonDataModel/">https://github.com/OHDSI/CommonDataModel/</a>.
|
|
|
|
|
|
It functions to dynamically create the OMOP CDM documentation and DDL
|
|
|
|
|
|
scripts to instantiate the CDM tables.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>✅</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="even">
|
|
|
|
|
|
<td><strong>Data Quality Dashboard</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/DataQualityDashboard">https://github.com/OHDSI/DataQualityDashboard</a>.
|
|
|
|
|
|
It runs a set of > 3500 data quality checks against an OMOP CDM
|
|
|
|
|
|
instance and is required to be run on all databases prior to
|
|
|
|
|
|
participating in an OHDSI network research study.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>⚠️</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="odd">
|
|
|
|
|
|
<td><strong>Achilles</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/Achilles">https://github.com/OHDSI/Achilles</a>,
|
|
|
|
|
|
performing a set of broad database characterizations agains an OMOP CDM
|
|
|
|
|
|
instance.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>⚠️</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="even">
|
|
|
|
|
|
<td><strong>ARES</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/Ares">https://github.com/OHDSI/Ares</a>
|
|
|
|
|
|
and is designed to display the results from both the ACHILLES and
|
|
|
|
|
|
DataQualityDashboard packages to support data quality and
|
|
|
|
|
|
characterization research.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>⚠️</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="odd">
|
|
|
|
|
|
<td><strong>ATLAS</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>ATLAS is an open source software tool for researchers to conduct
|
|
|
|
|
|
scientific analyses on standardized observational data. <a
|
|
|
|
|
|
href="http://atlas-demo.ohdsi.org/">Demo</a></td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>⚠️</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="even">
|
|
|
|
|
|
<td><strong>Rabbit-In-A-Hat</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/WhiteRabbit">https://github.com/OHDSI/WhiteRabbit</a>
|
|
|
|
|
|
and is an application for interactive design of an ETL to the OMOP
|
|
|
|
|
|
Common Data Model with the help of the the scan report generated by
|
|
|
|
|
|
White Rabbit.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>✅</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="odd">
|
|
|
|
|
|
<td><strong>Feature Extraction</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/FeatureExtraction">https://github.com/OHDSI/FeatureExtraction</a>.
|
|
|
|
|
|
It is designed to generate features (covariates) for a cohort generated
|
|
|
|
|
|
using the OMOP CDM.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>✅*</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
<tr class="even">
|
|
|
|
|
|
<td><strong>Cohort Diagnostics</strong></td>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<td>This package can be downloaded from <a
|
|
|
|
|
|
href="https://github.com/OHDSI/CohortDiagnostics">https://github.com/OHDSI/CohortDiagnostics</a>
|
|
|
|
|
|
and is used to critically evaluate cohort phenotypes.</td>
|
2022-01-17 18:29:26 +00:00
|
|
|
|
<td>✅</td>
|
|
|
|
|
|
<td>⚠️</td>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
</tr>
|
|
|
|
|
|
</tbody>
|
|
|
|
|
|
</table>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<p><br> * The <strong>Feature Extraction</strong> package supports all
|
|
|
|
|
|
relevant new features in CDM v5.4. For example, it was decided that,
|
|
|
|
|
|
from a methodological perspective, the EPISODE and EPISODE_EVENT tables
|
|
|
|
|
|
should not be included to define cohort covariates because the events
|
|
|
|
|
|
that make up episodes are already pulled in as potential covariates.</p>
|
2022-01-13 18:59:03 +00:00
|
|
|
|
<p><br></p>
|
|
|
|
|
|
</div>
|
2019-10-31 19:06:09 +00:00
|
|
|
|
<div id="cdm-wg-important-links" class="section level3">
|
|
|
|
|
|
<h3>CDM WG Important Links</h3>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<ul>
|
2023-01-03 19:23:06 +00:00
|
|
|
|
<li><a
|
|
|
|
|
|
href="https://drive.google.com/open?id=1DaNKe6ivIAZPJeI31VJ-pzNB9wS9hDqu">Google
|
|
|
|
|
|
Drive Location</a></li>
|
|
|
|
|
|
<li><a
|
|
|
|
|
|
href="https://docs.google.com/document/d/1WgKePjrI_cGdqn2XQCe1JdGaTzdMqU4p5ihkMt8fcAc/edit?usp=sharing">Running
|
|
|
|
|
|
Agenda</a></li>
|
|
|
|
|
|
<li><a href="https://github.com/OHDSI/CommonDataModel">CDM
|
|
|
|
|
|
Github</a></li>
|
|
|
|
|
|
<li><a
|
|
|
|
|
|
href="http://ohdsi.github.io/CommonDataModel/cdmRefreshProcess.html">Process
|
|
|
|
|
|
for adopting CDM and Vocabulary changes</a></li>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
</ul>
|
|
|
|
|
|
</div>
|
2021-06-03 14:45:05 +00:00
|
|
|
|
</div>
|
2019-08-28 15:02:47 +00:00
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
|
|
<script>
|
|
|
|
|
|
|
|
|
|
|
|
// add bootstrap table styles to pandoc tables
|
|
|
|
|
|
function bootstrapStylePandocTables() {
|
2021-01-06 15:52:57 +00:00
|
|
|
|
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
|
2019-08-28 15:02:47 +00:00
|
|
|
|
}
|
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
|
bootstrapStylePandocTables();
|
|
|
|
|
|
});
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
2020-04-27 20:35:41 +00:00
|
|
|
|
<!-- tabsets -->
|
|
|
|
|
|
|
|
|
|
|
|
<script>
|
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
|
window.buildTabsets("TOC");
|
|
|
|
|
|
});
|
|
|
|
|
|
|
|
|
|
|
|
$(document).ready(function () {
|
|
|
|
|
|
$('.tabset-dropdown > .nav-tabs > li').click(function () {
|
2022-01-13 16:01:36 +00:00
|
|
|
|
$(this).parent().toggleClass('nav-tabs-open');
|
2020-04-27 20:35:41 +00:00
|
|
|
|
});
|
|
|
|
|
|
});
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
|
|
<!-- code folding -->
|
|
|
|
|
|
|
|
|
|
|
|
|
2019-08-28 15:02:47 +00:00
|
|
|
|
<!-- dynamically load mathjax for compatibility with self-contained -->
|
|
|
|
|
|
<script>
|
|
|
|
|
|
(function () {
|
|
|
|
|
|
var script = document.createElement("script");
|
|
|
|
|
|
script.type = "text/javascript";
|
|
|
|
|
|
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
|
|
|
|
|
|
document.getElementsByTagName("head")[0].appendChild(script);
|
|
|
|
|
|
})();
|
|
|
|
|
|
</script>
|
|
|
|
|
|
|
|
|
|
|
|
</body>
|
|
|
|
|
|
</html>
|
