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Conventions
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CDM Versions
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< a href = "cdm30.html" > CDM v3.0< / a >
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< a href = "cdm53.html" > CDM v5.3< / a >
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< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" > NEW CDM v5.4< / a >
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< a href = "cdm54.html" > CDM v5.4< / a >
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Proposals
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< a href = "https://github.com/OHDSI/CommonDataModel/issues?q=is%3Aopen+is%3Aissue+label%3AProposal" > Under Review< / a >
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< a href = "https://github.com/OHDSI/CommonDataModel/issues/252" > Region_concept_id< / a >
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How to
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< h1 class = "title toc-ignore" > < strong > Changes by Table< / strong > < / h1 >
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< / div >
< p > < em > from CDM v5.3 -> CDM v5.4< / em > < / p >
< p > For a full description of each table and field listed here, please see the < a href = "http://ohdsi.github.io/CommonDataModel/cdm54.html" > CDM specification< / a > .< / p >
< p > Notation:< / p >
< ul >
< li > a < strong > +< / strong > indicates an addition to the model, either a table or field< / li >
< li > a < strong > -> < / strong > indicates an alteration either in naming or specification< / li >
< li > a < strong > -< / strong > indicates a subtraction from the model, either a table or field< / li >
< / ul >
< div id = "person" class = "section level2" >
< h2 > PERSON< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "observation_period" class = "section level2" >
< h2 > OBSERVATION_PERIOD< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "visit_occurrence" class = "section level2" >
< h2 > VISIT_OCCURRENCE< / h2 >
< ul >
< li > Admitting_source_concept_id -> < strong > Admitted_from_concept_id< / strong > < / li >
< li > Admitting_source_value -> < strong > Admitted_from_source_value< / strong > < / li >
< li > Discharge_to_concept_id -> < strong > Discharged_to_concept_id< / strong > < / li >
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< li > Discharge_to_source_value -> < strong > Discharged_to_source_value< / strong > < / li >
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< / ul >
< / div >
< div id = "visit_detail" class = "section level2" >
< h2 > VISIT_DETAIL< / h2 >
< ul >
< li > Admitting_source_concept_id -> < strong > Admitted_from_concept_id< / strong > < / li >
< li > Admitting_source_value -> < strong > Admitted_from_source_value< / strong > < / li >
< li > Discharge_to_concept_id -> < strong > Discharged_to_concept_id< / strong > < / li >
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< li > Discharge_to_source_value -> < strong > Discharged_to_source_value< / strong > < / li >
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< li > Visit_detail_parent_id -> < strong > Parent_visit_detail_id< / strong > < / li >
< / ul >
< / div >
< div id = "condition_occurrence" class = "section level2" >
< h2 > CONDITION_OCCURRENCE< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "drug_exposure" class = "section level2" >
< h2 > DRUG_EXPOSURE< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "procedure_occurrence" class = "section level2" >
< h2 > PROCEDURE_OCCURRENCE< / h2 >
< ul >
< li > + < strong > Procedure_end_date< / strong > < / li >
< li > + < strong > Procedure_end_datetime< / strong > < / li >
< / ul >
< / div >
< div id = "device_exposure" class = "section level2" >
< h2 > DEVICE_EXPOSURE< / h2 >
< ul >
< li > Unique_device_id -> < strong > Changed to varchar(255)< / strong > < / li >
< li > + < strong > Production_id< / strong > < / li >
< li > + < strong > Unit_concept_id< / strong > < / li >
< li > + < strong > Unit_source_value< / strong > < / li >
< li > + < strong > Unit_source_concept_id< / strong > < / li >
< / ul >
< / div >
< div id = "measurement" class = "section level2" >
< h2 > MEASUREMENT< / h2 >
< ul >
< li > + < strong > Unit_source_concept_id< / strong > < / li >
< li > + < strong > Measurement_event_id< / strong > < / li >
< li > + < strong > Meas_event_field_concept_id< / strong > < / li >
< / ul >
< / div >
< div id = "observation" class = "section level2" >
< h2 > OBSERVATION< / h2 >
< ul >
< li > + < strong > Value_source_value< / strong > < / li >
< li > + < strong > Observation_event_id< / strong > < / li >
< li > + < strong > Obs_event_field_concept_id< / strong > < / li >
< / ul >
< / div >
< div id = "death" class = "section level2" >
< h2 > DEATH< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "note" class = "section level2" >
< h2 > NOTE< / h2 >
< ul >
< li > + < strong > Note_event_id< / strong > < / li >
< li > + < strong > Note_event_field_concept_id< / strong > < / li >
< / ul >
< / div >
< div id = "note_nlp" class = "section level2" >
< h2 > NOTE_NLP< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "specimen" class = "section level2" >
< h2 > SPECIMEN< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "fact_relationship" class = "section level2" >
< h2 > FACT_RELATIONSHIP< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "location" class = "section level2" >
< h2 > LOCATION< / h2 >
< ul >
< li > + < strong > Country_concept_id< / strong > < / li >
< li > + < strong > Country_source_value< / strong > < / li >
< li > + < strong > Latitude< / strong > < / li >
< li > + < strong > Longitude< / strong > < / li >
< / ul >
< / div >
< div id = "care_site" class = "section level2" >
< h2 > CARE_SITE< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "payer_plan_period" class = "section level2" >
< h2 > PAYER_PLAN_PERIOD< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "cost" class = "section level2" >
< h2 > COST< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "drug_era" class = "section level2" >
< h2 > DRUG_ERA< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "dose_era" class = "section level2" >
< h2 > DOSE_ERA< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "condition_era" class = "section level2" >
< h2 > CONDITION_ERA< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "episode" class = "section level2" >
< h2 > + < strong > EPISODE< / strong > < / h2 >
< table >
< thead >
< tr class = "header" >
< th > EPISODE< / th >
< / tr >
< / thead >
< tbody >
< tr class = "odd" >
< td > episode_id< / td >
< / tr >
< tr class = "even" >
< td > person_id< / td >
< / tr >
< tr class = "odd" >
< td > episode_concept_id< / td >
< / tr >
< tr class = "even" >
< td > episode_start_date< / td >
< / tr >
< tr class = "odd" >
< td > episode_start_datetime< / td >
< / tr >
< tr class = "even" >
< td > episode_end_date< / td >
< / tr >
< tr class = "odd" >
< td > episode_end_datetime< / td >
< / tr >
< tr class = "even" >
< td > episode_parent_id< / td >
< / tr >
< tr class = "odd" >
< td > episode_number< / td >
< / tr >
< tr class = "even" >
< td > episode_object_concept_id< / td >
< / tr >
< tr class = "odd" >
< td > episode_type_concept_id< / td >
< / tr >
< tr class = "even" >
< td > episode_source_value< / td >
< / tr >
< tr class = "odd" >
< td > episode_source_concept_id< / td >
< / tr >
< / tbody >
< / table >
< / div >
< div id = "episode_event" class = "section level2" >
< h2 > + < strong > EPISODE_EVENT< / strong > < / h2 >
< table >
< thead >
< tr class = "header" >
< th > EPISODE_EVENT< / th >
< / tr >
< / thead >
< tbody >
< tr class = "odd" >
< td > episode_id< / td >
< / tr >
< tr class = "even" >
< td > event_id< / td >
< / tr >
< tr class = "odd" >
< td > episode_event_field_concept_id< / td >
< / tr >
< / tbody >
< / table >
< / div >
< div id = "metadata" class = "section level2" >
< h2 > METADATA< / h2 >
< ul >
< li > + < strong > Metadata_id< / strong > < / li >
< li > + < strong > Value_as_number< / strong > < / li >
< / ul >
< / div >
< div id = "cdm_source" class = "section level2" >
< h2 > CDM_SOURCE< / h2 >
< ul >
< li > Cdm_source_name -> < strong > Mandatory field< / strong > < / li >
< li > Cdm_source_abbreviation -> < strong > Mandatory field< / strong > < / li >
< li > Cdm_holder -> < strong > Mandatory field< / strong > < / li >
< li > Source_release_date -> < strong > Mandatory field< / strong > < / li >
< li > Cdm_release_date -> < strong > Mandatory field< / strong > < / li >
< li > + < strong > Cdm_version_concept_id< / strong > < / li >
< / ul >
< / div >
< div id = "concept" class = "section level2" >
< h2 > CONCEPT< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "vocabulary" class = "section level2" >
< h2 > VOCABULARY< / h2 >
< ul >
< li > Vocabulary_reference -> < strong > Non-mandatory field< / strong > < / li >
< li > Vocabulary_version -> < strong > Non-mandatory field< / strong > < / li >
< / ul >
< / div >
< div id = "domain" class = "section level2" >
< h2 > DOMAIN< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "concept_class" class = "section level2" >
< h2 > CONCEPT_CLASS< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "concept_relationship" class = "section level2" >
< h2 > CONCEPT_RELATIONSHIP< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "relationship" class = "section level2" >
< h2 > RELATIONSHIP< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "concept_synonym" class = "section level2" >
< h2 > CONCEPT_SYNONYM< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "concept_ancestor" class = "section level2" >
< h2 > CONCEPT_ANCESTOR< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "source_to_concept_map" class = "section level2" >
< h2 > SOURCE_TO_CONCEPT_MAP< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "drug_strength" class = "section level2" >
< h2 > DRUG_STRENGTH< / h2 >
< ul >
< li > No change< / li >
< / ul >
< / div >
< div id = "attribute_definition" class = "section level2" >
< h2 > - < strong > ATTRIBUTE_DEFINITION< / strong > < / h2 >
< / div >
< div id = "cohort" class = "section level2" >
< h2 > + < strong > COHORT< / strong > < / h2 >
< table >
< thead >
< tr class = "header" >
< th > COHORT< / th >
< / tr >
< / thead >
< tbody >
< tr class = "odd" >
< td > cohort_definition_id< / td >
< / tr >
< tr class = "even" >
< td > subject_id< / td >
< / tr >
< tr class = "odd" >
< td > cohort_start_date< / td >
< / tr >
< tr class = "even" >
< td > cohort_end_date< / td >
< / tr >
< / tbody >
< / table >
< / div >
< / div >
< / div >
< / div >
< script >
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
< / script >
<!-- tabsets -->
< script >
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
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$(this).parent().toggleClass('nav-tabs-open');
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});
});
< / script >
<!-- code folding -->
< script >
$(document).ready(function () {
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// temporarily add toc-ignore selector to headers for the consistency with Pandoc
$('.unlisted.unnumbered').addClass('toc-ignore')
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// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
// establish options
var options = {
selectors: "h1,h2,h3",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?& !#< >]/g, '').replace(/\s/g, '_');
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;
// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
< / script >
<!-- dynamically load mathjax for compatibility with self - contained -->
< script >
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
< / script >
< / body >
< / html >
