Add github actions workflow to build package and run tests.
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Adam Black
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
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# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
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on:
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push:
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branches:
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- '**'
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pull_request:
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branches:
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- '**'
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name: R-CMD-check
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jobs:
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R-CMD-check:
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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max-parallel: 1
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fail-fast: true
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matrix:
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config:
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#- {os: windows-latest, r: 'release'} # Does not appear to have Java 32-bit, hence the --no-multiarch
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- {os: macOS-latest, r: 'release'}
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#- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
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#- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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CDMDDLBASE_POSTGRESQL_USER: ${{ secrets.CDMDDLBASE_POSTGRESQL_USER }}
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CDMDDLBASE_POSTGRESQL_PASSWORD: ${{ secrets.CDMDDLBASE_POSTGRESQL_PASSWORD }}
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CDMDDLBASE_POSTGRESQL_SERVER: ${{ secrets.CDMDDLBASE_POSTGRESQL_SERVER }}
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CDMDDLBASE_POSTGRESQL_SCHEMA: ${{ secrets.CDMDDLBASE_POSTGRESQL_CDM_SCHEMA }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-r@v1
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with:
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r-version: ${{ matrix.config.r }}
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- uses: r-lib/actions/setup-tinytex@v1
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- uses: r-lib/actions/setup-pandoc@v1
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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- name: Cache R packages
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if: runner.os != 'Windows'
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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- name: Install system dependencies
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if: runner.os == 'Linux'
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run: |
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while read -r cmd
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do
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eval sudo $cmd
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done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
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- name: Install libssh
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if: runner.os == 'Linux'
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run: |
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sudo apt-get install libssh-dev
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- name: Install dependencies
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run: |
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remotes::install_deps(dependencies = TRUE, INSTALL_opts=c("--no-multiarch"))
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remotes::install_cran("rcmdcheck")
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shell: Rscript {0}
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- name: Install covr
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if: runner.os == 'macOS'
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run: |
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remotes::install_cran("covr")
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shell: Rscript {0}
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- name: Remove check folder if exists
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if: runner.os == 'macOS'
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run: unlink("check", recursive = TRUE)
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shell: Rscript {0}
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- name: Check
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env:
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_R_CHECK_CRAN_INCOMING_REMOTE_: false
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run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch"), error_on = "warning", check_dir = "check")
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shell: Rscript {0}
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- name: Upload check results
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if: failure()
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uses: actions/upload-artifact@v2
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check
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- name: Upload source package
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if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master'
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uses: actions/upload-artifact@v2
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with:
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name: package_tarball
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path: check/*.tar.gz
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- name: Test coverage
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if: runner.os == 'macOS'
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run: covr::codecov()
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shell: Rscript {0}
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