Commit Graph

467 Commits

Author SHA1 Message Date
clairblacketer 40ea8c7ff9 Created documentation folder and added license.md 2017-06-13 15:44:34 -04:00
clairblacketer 31e72c2d0c Merge pull request #40 from OHDSI/v5.1
V5.1
2017-06-13 15:10:25 -04:00
clairblacketer 7525f2a171 Merge branch 'master' into v5.1 2017-06-13 15:00:10 -04:00
clairblacketer e56f42ede1 Removing files for v4 and v4-to-v5 conversion as these have been moved to their own branches 2017-06-13 14:48:57 -04:00
clairblacketer 4ac76e52ba Merge pull request #51 from anthonysena/fix_25
Fixes #25
2017-06-09 10:56:52 -04:00
Anthony Sena e0dae5c370 Fixes #25 2017-06-09 09:57:23 -04:00
clairblacketer 539930792c Merge pull request #39 from rwpark99/patch-1
Update OMOP CDM indexes required - SQL Server.sql
2017-06-09 08:27:12 -04:00
clairblacketer c6ec5eed93 Merge pull request #45 from mi-erasmusmc/master
Fixed constraints referring to old event cost tables in favor of the singular cost table
2017-06-09 08:23:46 -04:00
clairblacketer 948a8e833a Merge pull request #46 from tomwhite/impala-timestamp-parquet
Add a step to transform data into Parquet, and use TIMESTAMP type for dates
2017-06-09 08:21:55 -04:00
Karthik 802a43267a Updated formatting in Readme file 2017-06-04 22:28:15 -04:00
Karthik 7bba78ac08 Removed references to OMOP CDM v4. Updated Readme to include changes from v5 to v5.1 2017-06-04 22:25:52 -04:00
Tom White 5f276b46fe Impala v5.1 2017-04-20 11:05:21 +01:00
Tom White 7d2c9f3081 Add a step to transform data into Parquet, and use TIMESTAMP type for dates. 2017-04-18 11:05:47 +01:00
Peter Rijnbeek eca889af53 Fixed Constraints
Constraints referred to old cost tables.
2017-03-08 15:59:33 +01:00
Christian Reich bf39b90e3b Added Version logic 2017-02-07 14:02:42 -05:00
Karthik Natarajan 5643fc5107 Merge branch 'v5.1' of https://github.com/OHDSI/CommonDataModel into v5.1 2017-01-12 16:15:00 -05:00
Karthik Natarajan 230a1b0961 Made changes to adhere to the new CDM changes for version 5.1 for Oracle, Postgres, and SQL Server. Added death_datetime to the death table 2017-01-12 16:10:00 -05:00
kan7003 c412304d22 Changed the column name from datetime_of_birth to birth_datetime to stick with the new naming convention. 2017-01-03 21:37:59 -05:00
kan7003 183e42b552 Changed the column name from datetime_of_birth to birth_datetime to stick with the new naming convention. 2017-01-03 21:37:38 -05:00
kan7003 b7b98c6c95 Changed the column name from datetime_of_birth to birth_datetime to stick with the new naming convention. 2017-01-03 21:37:06 -05:00
Karthik Natarajan 20a6f4a04f Made changes to adhere to the new CDM changes for version 5.1 for Oracle 2017-01-02 19:27:35 -05:00
Karthik Natarajan 866c8c666b Made changes to adhere to the new CDM changes for version 5.1 for Postgres 2017-01-02 19:22:13 -05:00
Karthik Natarajan aef6a3a550 Made changes to adhere to the new CDM changes for version 5.1 2017-01-02 19:08:27 -05:00
Rae Woong Park d489f002a3 Update OMOP CDM indexes required - SQL Server.sql
We added some more required indexes, which were identified by running the 'Estimated Execution Plan' in the  Microsoft SQL Management Studio.

Some related discussions are here: http://forums.ohdsi.org/t/incremental-achilles/1847
2016-11-06 23:18:54 +09:00
Patrick Ryan a8d6557a56 Merge pull request #29 from rstarr7/master
added denominator_value to oracle drug-strength load file.
2016-10-26 17:26:27 -04:00
Patrick Ryan d99820c5e2 Merge pull request #37 from tomwhite/impala
Add scripts for creating a schema and importing data into Impala.
2016-10-26 17:25:59 -04:00
Tom White d5a1a8e43b Add scripts for creating a schema and importing data into Impala. 2016-10-12 11:36:40 +01:00
Patrick Ryan ec3fdc2f1e Merge pull request #33 from anthonysena/master
Adding box_size to the DDL
2016-09-06 15:16:54 -04:00
Anthony Sena d4a4d175fd Resolves OHDSI/CommonDataModel#32 box_size issue 2016-09-01 13:56:50 -04:00
Patrick Ryan 8bb3f64c97 Merge pull request #26 from anthonysena/master
Inclusion of Type Concept
2016-08-29 13:37:30 -04:00
Christian Reich 2ab4be78c4 New cost table instead of individual cost tables 2016-05-02 10:04:22 -04:00
rstarr7 387dc184ec Merge pull request #1 from rstarr7/rstarr7-patch-1
added denominator_value to oracle drug-strength load file.
2016-04-29 17:00:01 -04:00
rstarr7 c2df5351f4 added denominator_value to oracle drug-strength load file. 2016-04-29 14:32:51 -04:00
Martijn Schuemie 28fddb85bd Merge pull request #27 from arestenko/drug_strength_fix
Add denominator_value to DRUG_STRENGTH
2016-03-29 12:02:59 +02:00
Alexey Arestenko fa61c2ba7e Add denominator_value to DRUG_STRENGTH 2016-02-05 22:02:53 +03:00
Anthony Sena 021c9f5a14 Including the 'Type Concept' domain_id from the latest version of the vocabulary 2015-12-15 10:08:59 -05:00
Anthony Sena 11188fee37 Including the 'Type Concept' domain_id from the latest version of the vocabulary. 2015-12-15 10:03:41 -05:00
Anthony Sena 8badc57395 Resolving issue where unit_concept_id was not mapped to the Measurement table properly 2015-09-24 13:40:25 -04:00
Patrick Ryan 101c632072 Merge pull request #22 from anthonysena/V5ConversionImprovement
Adding Redshift & SQL Server PDW translations and fixing era logic bug
2015-09-01 13:21:58 -04:00
Anthony Sena cb116a29a0 Adding in Redshift and SQL Server PDW translations along with a bug fix to the era logic 2015-09-01 13:18:42 -04:00
Jon Duke 69a9555b50 Update README.md 2015-08-18 22:21:57 -04:00
Patrick Ryan 2caea197eb Merge pull request #20 from anthonysena/V5ConversionImprovement
Improvements to conversion scripts, documentation and DRG conversion.
2015-08-09 16:25:59 -04:00
Anthony Sena bac9cebf33 Improvements to scripts, documentation and inclusion of DRG conversion. 2015-08-05 15:07:59 -04:00
Patrick Ryan af2e823059 Merge pull request #19 from anthonysena/V4toV5Conversion
V4to v5 conversion cross platform tested
2015-07-09 20:44:11 -04:00
Anthony Sena 04fd25a73d One more edit to the README.md 2015-07-09 10:06:20 -04:00
Anthony Sena 3af8f2e76b README.md updates 2015-07-09 09:53:40 -04:00
Anthony Sena c3e7bb7eea Final commit before push 2015-07-09 08:47:18 -04:00
Anthony Sena 0fd4f7ebe1 Saving progress before I rewrite the source_concept_map_occurrence table to remove the need for an UPDATE statement in this script. 2015-07-07 14:32:08 -04:00
Anthony Sena 386793b101 Addressing bugs from PostgreSQL/Oracle testing 2015-07-06 08:44:31 -04:00
Patrick Ryan 21cf148715 Merge pull request #18 from anthonysena/V4toV5Conversion
Initial commit for the CDM v4 to v5 conversion scripts.
2015-07-01 11:18:00 -04:00