a2812b85e5
Added EPISODE and EPISODE_EVENT tables to table_level_5.4
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Also update the oncology extension documents to align with the table level file for v5.4
2021-08-19 12:45:44 -04:00
4be728e9d8
Updates to yml and cdm531.Rmd
2021-08-19 12:20:49 -04:00
19462d322d
Add tests, github actions, and executeDdl function ( #425 )
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* Add github actions workflow to build package and run tests.
* update Description file
* rename .Rproj file.
* Consolidate 'create' functions into one file.
* Add tests for create functions.
* update description
* removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.
* consolidate write functions into one file. Add execute function.
* update docs
* add tests for write and execute functions
* update documentation
* Add windows and linux runners in github actions.
* update github actions
* download drivers before running tests
* fix small error in setup test file.
* debug github actions
* debug github actions
* debug github actions
* debug github actions
* fix tiny bug
* comment out execute ddl test
* fix bug in test
* Add execute test back in
* revert accidental change in description
* add print statement for debugging schema error on github actions.
* Fix schema environment variable name
* Add comment to github actions workflow file.
* remove placeholder text in function documentation.
* Rename createdDdl.R to createDdl.R
Co-authored-by: Adam Black <adam.black@odysseusinc.com>
2021-08-19 11:49:36 -04:00
05e9b801e0
Rename createdDdl.R to createDdl.R
2021-08-19 11:47:56 -04:00
948a78c09f
remove placeholder text in function documentation.
2021-08-19 11:46:01 -04:00
35ce18ce81
Add comment to github actions workflow file.
2021-08-19 09:23:11 -04:00
618f35fe02
Fix schema environment variable name
2021-08-19 09:13:04 -04:00
66a892d87c
add print statement for debugging schema error on github actions.
2021-08-19 09:11:02 -04:00
fb950dedf8
revert accidental change in description
2021-08-19 08:58:34 -04:00
c2717409d3
Add execute test back in
2021-08-19 08:33:24 -04:00
cea09cf273
fix bug in test
2021-08-19 08:23:41 -04:00
7ecd0a5410
comment out execute ddl test
2021-08-19 08:13:03 -04:00
c85759800e
fix tiny bug
2021-08-19 07:47:49 -04:00
bce8bc5edc
debug github actions
2021-08-19 07:45:18 -04:00
639d6a9d0a
debug github actions
2021-08-19 07:35:41 -04:00
7a59d0350f
debug github actions
2021-08-19 00:25:02 -04:00
b54b1947dd
debug github actions
2021-08-19 00:18:54 -04:00
3b2c6b5757
fix small error in setup test file.
2021-08-19 00:12:04 -04:00
d17830759e
download drivers before running tests
2021-08-19 00:04:51 -04:00
a6366dff4a
update github actions
2021-08-18 23:50:22 -04:00
33919b85cf
Add windows and linux runners in github actions.
2021-08-18 23:48:34 -04:00
70798bb1b6
update documentation
2021-08-18 23:36:11 -04:00
ae921ede24
add tests for write and execute functions
2021-08-18 23:35:38 -04:00
e6a2940474
update docs
2021-08-18 23:34:48 -04:00
08bf6ee17e
consolidate write functions into one file. Add execute function.
2021-08-18 23:32:31 -04:00
867e9bb559
removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.
2021-08-18 23:28:57 -04:00
887e882572
update description
2021-08-18 23:27:01 -04:00
f92a21cd64
Add tests for create functions.
2021-08-18 17:20:59 -04:00
02260fb855
Consolidate 'create' functions into one file.
2021-08-18 17:20:34 -04:00
9508b28c51
rename .Rproj file.
2021-08-18 17:19:56 -04:00
cccdaef586
update Description file
2021-08-18 17:19:34 -04:00
f603929f8b
Add github actions workflow to build package and run tests.
2021-08-18 17:19:20 -04:00
27522b0896
Merge pull request #423 from OHDSI/v5.4_cleanup
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various
2021-08-18 16:07:09 -04:00
918b57bcca
Merge branch 'v5.4' into v5.4_cleanup
2021-08-18 16:06:08 -04:00
a4bfeccf83
function naming & additional cleanup
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made create and write functions consistent
fixed render issue that was not including dialect name in generated files
added loop to codeToRun to generate all scripts.
2021-08-18 15:30:04 -04:00
5dd9850088
Merge pull request #414 from NACHC-CAD/v5.4
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Issue #259 [measurement table] added unit_source_concept_id
2021-08-18 15:05:21 -04:00
ea0fc0f80b
Merge branch 'v5.4' into v5.4
2021-08-18 15:05:14 -04:00
577cad1cc5
Merge pull request #413 from aandryc/v5.4
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Added CDM v5.4 menu item
2021-08-18 14:56:29 -04:00
915d7595bb
Merge branch 'v5.4' into v5.4
2021-08-18 14:56:07 -04:00
b4661f637d
Issue #149 saved fix for nullables in vocabulary table (vocabulary_reference and vocabulary_version both have isRequired=No)
2021-08-18 14:37:43 -04:00
be7ea44fba
various
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fixed writePrimary use of fk function
removed old/unnecessary files - reviewed with CB
added listSupportedVersions function - explicitly not including 6.0
2021-08-18 14:24:45 -04:00
543893d406
Issue #149 fix for nullables in vocabulary table (vocabulary_reference isRequired=Yes vocabulary_version isRequired=No)
2021-08-18 14:23:54 -04:00
25ac31bee4
Merge pull request #421 from OHDSI/sql-creates-refactor
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Refactor create and write SQL functions
2021-08-18 13:55:26 -04:00
be95ab5260
Merge pull request #417 from stephanieshong/v5.4
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issue 193 - Added value_source_value column to the Observation Table.
2021-08-18 13:52:24 -04:00
b17ca8a856
Merge branch 'v5.4' into v5.4
2021-08-18 13:52:15 -04:00
a83cf75580
Merge pull request #419 from schillil/v5.4
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Fixes Admitting_Source_xx to Admitted_From_xx in Visit_Detail and Visit_Occurrence Tables
2021-08-18 13:47:30 -04:00
12e5fb3467
add new ddl folder with generated sql
2021-08-18 19:47:13 +02:00
efc286e738
Merge branch 'v5.4' into v5.4
2021-08-18 13:47:13 -04:00
8d29222563
refactor index creation and cleanup codeToRun
2021-08-18 19:42:01 +02:00
3e17ee1715
Merge branch 'v5.4' of https://github.com/aandryc/CommonDataModel
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Updating local branch to reflect changes made by team.
2021-08-18 13:36:21 -04:00
Clair Blacketer
Andryc
Adam Black
Adam Black
Frank DeFalco
Frank DeFalco
clairblacketer
unknown
Maxim Moinat