mz-health/OMOP
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OMOP
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659 Commits

Author SHA1 Message Date
Clair Blacketer 800dca15e2 Fixing tables due to kable update, adding fix to drug_era script 2022-04-07 11:14:50 -04:00
Clair Blacketer 8451b5027b Revert "Adding fix to Drug_Era query and conforming to kable updates" 
This reverts commit b3ab33e95e.
 2022-04-07 11:04:01 -04:00
Clair Blacketer b3ab33e95e Adding fix to Drug_Era query and conforming to kable updates 2022-04-07 10:57:51 -04:00
ssuvorov-fls 0c13595972 restored some columns due to changes in omop cdm 2022-04-01 09:08:50 +03:00
ssuvorov-fls e1e010a3df added snowflake support 2022-03-30 10:53:52 +03:00
Clair Blacketer af1effdedc Added reference to the package 2022-01-21 15:35:13 -05:00
Clair Blacketer 477fb8a191 Fixes to CDM v5.4 constraints 
Removed an incorrect linkage of person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:32:48 -05:00
Clair Blacketer 8fecffb215 Fix to CDM v5.3 Constraints 
Removed constraint linking person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:30:53 -05:00
Clair Blacketer 7821578b10 Updating symbols 
This commit changes the symbols used in the support table so that they can be recognized without colors
 2022-01-17 13:29:26 -05:00
clairblacketer 805553cdb2
Merge pull request #462 from na399/master 
Fix broken links: v5.4.0
 2022-01-14 11:38:06 -05:00
clairblacketer 5de46c92b6
Merge pull request #473 from OHDSI/Jan2022_fixes 
Jan2022 fixes
 2022-01-14 10:59:52 -05:00
Clair Blacketer f006431a5e Bug fixes and updates from Nov 2021 - Jan 2022 2022-01-13 13:59:03 -05:00
Clair Blacketer 09fe23fd44 Fixes mismatches in data types (removes bigints) 
closes #453
 2022-01-13 12:34:30 -05:00
Clair Blacketer 4d77b93fe7 Makes sure ingredients pulled are standard concepts 
closes #454
 2022-01-13 12:28:44 -05:00
clairblacketer 80eebce2b6
Merge pull request #472 from OHDSI/master 
Rebase Jan2022_fixes branch
 2022-01-13 12:19:58 -05:00
clairblacketer 7e092bc44e
Merge pull request #460 from flying-burrito/era-dates 
Update v5.3 / v5.4 docs for Era tables: use date type for *_date fields
 2022-01-13 12:15:43 -05:00
Clair Blacketer 4aee003f5d Clean up readMe 
closes #461
 2022-01-13 12:11:00 -05:00
Clair Blacketer 247a1fe0c1 Adds version queries for the cdm and vocab 
closes #463
 2022-01-13 11:49:47 -05:00
Clair Blacketer 6b53641c83 Clarifies CARE_SITE_ID description 
closes #468
 2022-01-13 11:09:21 -05:00
Clair Blacketer c66a27e3db Add link to vocab wiki about type concepts 
closes #470
 2022-01-13 11:07:21 -05:00
Clair Blacketer ed3a4a49a3 Adds link directly to DDLs 
Closes #471
 2022-01-13 11:01:36 -05:00
Clair Blacketer 15f5fb1ed5 Update OMOP_CDMv5.4_Field_Level.csv 
Fixing PK issue in cohort and cohort definition
 2021-12-21 10:07:32 -05:00
Clair Blacketer 125ac08c77 Add CDM R package demo to website 2021-11-19 09:22:53 -05:00
Max Natthawut Adulyanukosol c4b593c35f Fix broken links: v5.4.0 2021-11-18 11:49:33 +07:00
flying-burrito f5841f55e4 upd: v5.3 / v5.4 docs for Era tables, use date type for *_date fields 2021-11-17 16:51:11 +01:00
Clair Blacketer c768fa7e91 Fix to visit_detail change doc v5.4 discharge_to_source_value 2021-09-28 09:18:00 -04:00
Clair Blacketer 57cb8127cb Fix to discharged_to_source_value change doc 2021-09-28 09:04:23 -04:00
Clair Blacketer dd85c0d30b Adding titles to webpages 2021-09-24 21:02:39 -04:00
Clair Blacketer 02af0bc317 Reintroducing a v5.3.1 html page to alleviate confusion 2021-09-24 12:24:55 -04:00
Clair Blacketer 8dfc4835a7 Corresponding fixes to html for v5.3 and v6.0 2021-09-23 15:34:17 -04:00
Clair Blacketer 9e4b5978c8 Bugfix to cdm v6.0 
VISIT_DETAIL.admitting_source_value and admitting_souce_concept_id were renamed to admitted_from_concept_id and admitted_from_source_value.
 2021-09-23 15:26:59 -04:00
Clair Blacketer 4c8f054784 Fix to CDM v6.0 to add back cohort table 2021-09-23 10:52:05 -04:00
Clair Blacketer 5927b49a53 Multiple fixes 
Fixed issue in CDM v5.3 field level csv, formatted rmd files, fixed documentation of the buildReleaseZip() function.
 2021-09-23 10:42:24 -04:00
Clair Blacketer b89ce618c5 Formatting to front page 2021-09-23 10:06:07 -04:00
Clair Blacketer 794be47b0b Formatting Update to index.rmd 2021-09-23 09:34:28 -04:00
Clair Blacketer ea933efe86 Updated html 
Updated html with changes to rmarkdown files
 2021-09-23 09:26:43 -04:00
Clair Blacketer 542a76e6a1 Update README.md 
Updated function call in the readme to use buildRelease()
 2021-09-23 09:23:21 -04:00
Clair Blacketer b5b79fbfa5 Update README.md 
Added link to bugfix description
 2021-09-23 09:21:16 -04:00
Clair Blacketer 568246ec60 Update cdm60.Rmd 
Updated links to cdm v5.4
 2021-09-23 09:12:58 -04:00
Clair Blacketer fb9dcab5be Merge branch 'master' of https://github.com/OHDSI/CommonDataModel 2021-09-23 09:09:15 -04:00
Clair Blacketer 2103e95087 Update index.Rmd 
Adding more detail on the model and vocabulary with links to athena and hades.
 2021-09-23 09:09:10 -04:00
clairblacketer 3338dcfa7c
Update README.md 2021-09-22 16:08:01 -04:00
Clair Blacketer bb36513f6c Updated ReadMe with images 2021-09-22 16:07:07 -04:00
clairblacketer fd0703ae4c
Merge pull request #448 from OHDSI/v5.4 
CDM V5.4
 2021-09-22 15:56:34 -04:00
Clair Blacketer 8d7d0199af Regenerate DDLs for CDM 5.4 2021-09-22 15:50:21 -04:00
Clair Blacketer 46da3238af Documentation updates to support CDM v5.4 2021-09-22 15:39:44 -04:00
Clair Blacketer a87f9d149a Update .gitignore 
added CodeToRun.R to gitignore
 2021-09-09 15:45:55 -04:00
Clair Blacketer df96c30bf4 Merge branch 'v5.4' of https://github.com/OHDSI/CommonDataModel into v5.4 2021-09-09 15:39:21 -04:00
Clair Blacketer 2f7da6ab09 Delete .DS_Store 2021-09-09 15:39:11 -04:00
clairblacketer a611aec18a
Merge pull request #438 from OHDSI/vocabulary-doc-update 
Update vocabulary.Rmd
 2021-09-08 16:42:46 -04:00