mz-health/OMOP
mz-health
/
OMOP
mirror of https://github.com/OHDSI/CommonDataModel.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
537 Commits 20 Branches 19 Tags 22 MiB
Commit Graph

537 Commits

Author SHA1 Message Date
Adam Black d1186aacbe add windows and linux runners 2021-08-20 00:10:41 -04:00
Adam Black c98e171ebc add ddl execution 2021-08-19 23:58:18 -04:00
Adam Black ec02071b64 test connection on all platforms 2021-08-19 23:42:04 -04:00
Adam Black 8fc2ae6e4e debug actions 2021-08-19 23:38:29 -04:00
Adam Black 1f994c7eb4 Add missing secrets to yaml!! 2021-08-19 23:30:12 -04:00
Adam Black 2a9fa71612 debug actions. 2021-08-19 23:12:55 -04:00
Adam Black 3af7fdbe69 debug actions 2021-08-19 23:05:43 -04:00
Adam Black 94ffcba404 debug actions. 2021-08-19 22:59:07 -04:00
Adam Black 1610328836 debug github actions 2021-08-19 22:46:33 -04:00
Adam Black e68cb43854 debug tests on github 2021-08-19 22:45:23 -04:00
Adam Black d6d213c7f6 fix bug in setup 2021-08-19 22:31:06 -04:00
Adam Black cedf334df6 Add tests for oracle and sql server. Move setup.R file. 2021-08-19 22:23:39 -04:00
Adam Black 2b0acc8d53 update setup file 2021-08-19 18:49:15 -04:00
Adam Black ff4f8337f8 Fix bug in setup test script. 2021-08-19 16:28:21 -04:00
Adam Black 7e08fa1737 Merge Claire's DDL updates 2021-08-19 16:24:06 -04:00
Adam Black eb3d27926f Add imports and update docs. 2021-08-19 16:22:08 -04:00
Adam Black 63ba979509 Merge in Maxims changes. update documentation 2021-08-19 16:00:24 -04:00
Clair Blacketer 041291eb27 Foreign key fixes 2021-08-19 15:52:33 -04:00
Maxim Moinat b3fddfbb85
Function to Build Release Zips (#429) 
* buildRelease and buildReleaseZip

* add buildRelease
 2021-08-19 15:43:34 -04:00
Adam Black ed5fb2d428 Add tests for redshift. Clean up test setup file. 2021-08-19 15:17:01 -04:00
Clair Blacketer 690c9edf40 Updated DDLs 2021-08-19 15:04:43 -04:00
Clair Blacketer c1a4422dd1 Changed bigint to integer for consistency 2021-08-19 14:54:44 -04:00
Clair Blacketer 7067be34ac Hack-a-thon updates 
Closes #81, #387, #239, #412, #391, #330, #408, #365, #306, #264
 2021-08-19 14:42:18 -04:00
Alan Andryc d73a0f426d
Merge branch 'v5.4' into v5.4 2021-08-19 13:30:50 -04:00
Andryc 7036b0e0f3 resolving merge issue on field level csv 2021-08-19 13:14:23 -04:00
Clair Blacketer c9463d0cf1 Adding EPISODE and EPISODE event tables 2021-08-19 12:58:41 -04:00
Andryc 6414b42f6b prepping for pull request 2021-08-19 12:46:40 -04:00
Clair Blacketer a2812b85e5 Added EPISODE and EPISODE_EVENT tables to table_level_5.4 
Also update the oncology extension documents to align with the table level file for v5.4
 2021-08-19 12:45:44 -04:00
Andryc 4be728e9d8 Updates to yml and cdm531.Rmd 2021-08-19 12:20:49 -04:00
Adam Black 19462d322d
Add tests, github actions, and executeDdl function (#425) 
* Add github actions workflow to build package and run tests.

* update Description file

* rename .Rproj file.

* Consolidate 'create' functions into one file.

* Add tests for create functions.

* update description

* removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file.

* consolidate write functions into one file. Add execute function.

* update docs

* add tests for write and execute functions

* update documentation

* Add windows and linux runners in github actions.

* update github actions

* download drivers before running tests

* fix small error in setup test file.

* debug github actions

* debug github actions

* debug github actions

* debug github actions

* fix tiny bug

* comment out execute ddl test

* fix bug in test

* Add execute test back in

* revert accidental change in description

* add print statement for debugging schema error on github actions.

* Fix schema environment variable name

* Add comment to github actions workflow file.

* remove placeholder text in function documentation.

* Rename createdDdl.R to createDdl.R

Co-authored-by: Adam Black <adam.black@odysseusinc.com>
 2021-08-19 11:49:36 -04:00
Adam Black 05e9b801e0 Rename createdDdl.R to createDdl.R 2021-08-19 11:47:56 -04:00
Adam Black 948a78c09f remove placeholder text in function documentation. 2021-08-19 11:46:01 -04:00
Adam Black 35ce18ce81 Add comment to github actions workflow file. 2021-08-19 09:23:11 -04:00
Adam Black 618f35fe02 Fix schema environment variable name 2021-08-19 09:13:04 -04:00
Adam Black 66a892d87c add print statement for debugging schema error on github actions. 2021-08-19 09:11:02 -04:00
Adam Black fb950dedf8 revert accidental change in description 2021-08-19 08:58:34 -04:00
Adam Black c2717409d3 Add execute test back in 2021-08-19 08:33:24 -04:00
Adam Black cea09cf273 fix bug in test 2021-08-19 08:23:41 -04:00
Adam Black 7ecd0a5410 comment out execute ddl test 2021-08-19 08:13:03 -04:00
Adam Black c85759800e fix tiny bug 2021-08-19 07:47:49 -04:00
Adam Black bce8bc5edc debug github actions 2021-08-19 07:45:18 -04:00
Adam Black 639d6a9d0a debug github actions 2021-08-19 07:35:41 -04:00
Adam Black 7a59d0350f debug github actions 2021-08-19 00:25:02 -04:00
Adam Black b54b1947dd debug github actions 2021-08-19 00:18:54 -04:00
Adam Black 3b2c6b5757 fix small error in setup test file. 2021-08-19 00:12:04 -04:00
Adam Black d17830759e download drivers before running tests 2021-08-19 00:04:51 -04:00
Adam Black a6366dff4a update github actions 2021-08-18 23:50:22 -04:00
Adam Black 33919b85cf Add windows and linux runners in github actions. 2021-08-18 23:48:34 -04:00
Adam Black 70798bb1b6 update documentation 2021-08-18 23:36:11 -04:00
Adam Black ae921ede24 add tests for write and execute functions 2021-08-18 23:35:38 -04:00