mz-health/OMOP
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OMOP
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Commit Graph

  • 2f7da6ab09 Delete .DS_Store Clair Blacketer 2021-09-09 15:39:11 -0400
  • f43c58d0a8 Delete .DS_Store Clair Blacketer 2021-09-09 15:34:48 -0400
  • a611aec18a
         Merge pull request #438 from OHDSI/vocabulary-doc-update clairblacketer 2021-09-08 16:42:46 -0400
  • 941db87234
         Update OMOP CDM pdw ddl.txt Charlie Pyne 2021-09-01 13:48:20 -0400
  • 76f92f5272 Added Spark Scripts Sathyaraos 2021-08-31 17:28:54 -0400
  • 9779c07b72
         Merge pull request #437 from OHDSI/v5.4_unittest clairblacketer 2021-08-31 13:48:45 -0400
  • d5886848da
         Fixed condition_era column names lofung 2021-08-31 15:00:05 +0800
  • f13f657d7c update vocabulary doc html Maxim Moinat 2021-08-24 14:11:11 +0200
  • 15bb11df2d
         Update vocabulary.Rmd Maxim Moinat 2021-08-24 13:48:11 +0200
  • 3949b9e395 Merge branch 'v5.4_unittest' of github.com:OHDSI/CommonDataModel into v5.4_unittest Adam Black 2021-08-20 14:19:44 -0400
  • 63e2979481
         V5.4 (#435) Adam Black 2021-08-20 13:30:34 -0400
  • d84141b5d8
         add changes to v5.4 (#433) Adam Black 2021-08-20 13:00:03 -0400
  • b7a651d5a1 Merge branch 'v5.4' of github.com:OHDSI/CommonDataModel into v5.4 Adam Black 2021-08-20 12:58:03 -0400
  • 17a0b8c8b5 Merge branch 'v5.4_unittest' of github.com:OHDSI/CommonDataModel into v5.4 Adam Black 2021-08-20 12:53:57 -0400
  • fabf605543 Add OMOP header genearator function Adam Black 2021-08-20 12:52:08 -0400
  • 5a27d02ead
         Merge pull request #430 from OHDSI/v5.4_cb_updates clairblacketer 2021-08-20 12:50:35 -0400
  • 40e26982d4
         Add test for buildRelease (#432) Adam Black 2021-08-20 12:32:46 -0400
  • 4e0f815228 Merge branch 'v5.4_unittest' of github.com:OHDSI/CommonDataModel into v5.4 Adam Black 2021-08-20 12:23:33 -0400
  • 13c6fc4cf3 update documentation Adam Black 2021-08-20 12:10:41 -0400
  • d17a4c3e2e move ddl folder to inst so it is accessible from tests Adam Black 2021-08-20 12:05:15 -0400
  • de1c577b6b replace outputpath with outputfolder for consistency. update documentation. Adam Black 2021-08-20 11:25:10 -0400
  • b8425920ff Add test for buildRelease. Adam Black 2021-08-20 11:06:47 -0400
  • f7a42d5482 replace outputpath with outputfolder for consitent argument names in the package. Adam Black 2021-08-20 11:06:23 -0400
  • 57d40c2a7d Allow user to specify output location in buildRelease Adam Black 2021-08-20 11:05:46 -0400
  • 39213577c3 Trying again to remove .DS_Store, adding to gitignore Clair Blacketer 2021-08-20 09:34:21 -0400
  • 83d6a30376 Removing unnecessary file Clair Blacketer 2021-08-20 08:52:52 -0400
  • 02d03b4a60 Resolving conflicts Clair Blacketer 2021-08-20 08:50:18 -0400
  • 532be98c0c
         Add unit tests for all databases and DDLs (#431) Adam Black 2021-08-20 07:59:29 -0400
  • d1186aacbe add windows and linux runners Adam Black 2021-08-20 00:10:41 -0400
  • c98e171ebc add ddl execution Adam Black 2021-08-19 23:58:18 -0400
  • ec02071b64 test connection on all platforms Adam Black 2021-08-19 23:42:04 -0400
  • 8fc2ae6e4e debug actions Adam Black 2021-08-19 23:38:29 -0400
  • 1f994c7eb4 Add missing secrets to yaml!! Adam Black 2021-08-19 23:30:12 -0400
  • 2a9fa71612 debug actions. Adam Black 2021-08-19 23:12:55 -0400
  • 3af7fdbe69 debug actions Adam Black 2021-08-19 23:05:43 -0400
  • 94ffcba404 debug actions. Adam Black 2021-08-19 22:59:07 -0400
  • 1610328836 debug github actions Adam Black 2021-08-19 22:46:33 -0400
  • e68cb43854 debug tests on github Adam Black 2021-08-19 22:45:23 -0400
  • d6d213c7f6 fix bug in setup Adam Black 2021-08-19 22:31:06 -0400
  • cedf334df6 Add tests for oracle and sql server. Move setup.R file. Adam Black 2021-08-19 22:23:39 -0400
  • 2b0acc8d53 update setup file Adam Black 2021-08-19 18:49:15 -0400
  • ff4f8337f8 Fix bug in setup test script. Adam Black 2021-08-19 16:28:21 -0400
  • 7e08fa1737 Merge Claire's DDL updates Adam Black 2021-08-19 16:24:06 -0400
  • eb3d27926f Add imports and update docs. Adam Black 2021-08-19 16:22:08 -0400
  • 63ba979509 Merge in Maxims changes. update documentation Adam Black 2021-08-19 16:00:24 -0400
  • 041291eb27 Foreign key fixes Clair Blacketer 2021-08-19 15:52:33 -0400
  • b3fddfbb85
         Function to Build Release Zips (#429) Maxim Moinat 2021-08-19 21:43:34 +0200
  • 2d12574e1a Created article on indices, primary and foreign keys Andryc 2021-08-19 15:18:09 -0400
  • ed5fb2d428 Add tests for redshift. Clean up test setup file. Adam Black 2021-08-19 15:17:01 -0400
  • 690c9edf40 Updated DDLs Clair Blacketer 2021-08-19 15:04:43 -0400
  • c1a4422dd1 Changed bigint to integer for consistency Clair Blacketer 2021-08-19 14:54:44 -0400
  • 7067be34ac Hack-a-thon updates Clair Blacketer 2021-08-19 14:42:18 -0400
  • cc4947d08f add buildRelease Maxim Moinat 2021-08-19 20:38:26 +0200
  • b30b1e1253 buildRelease and buildReleaseZip Maxim Moinat 2021-08-19 20:16:27 +0200
  • 56c80f796a Updated the visit_end_date and visit_end_date_time with information on how to handel records with no end dates Andryc 2021-08-19 14:01:20 -0400
  • f603dd7451 updated discharged_to ETL guidance description Andryc 2021-08-19 13:48:20 -0400
  • d73a0f426d
         Merge branch 'v5.4' into v5.4 Alan Andryc 2021-08-19 13:30:50 -0400
  • 2651487959
         Merge branch 'v5.4' into v5.4 Alan Andryc 2021-08-19 13:24:45 -0400
  • 7036b0e0f3 resolving merge issue on field level csv Andryc 2021-08-19 13:14:23 -0400
  • c9463d0cf1 Adding EPISODE and EPISODE event tables Clair Blacketer 2021-08-19 12:58:41 -0400
  • 6414b42f6b prepping for pull request Andryc 2021-08-19 12:46:40 -0400
  • a2812b85e5 Added EPISODE and EPISODE_EVENT tables to table_level_5.4 Clair Blacketer 2021-08-19 12:45:44 -0400
  • 4be728e9d8 Updates to yml and cdm531.Rmd Andryc 2021-08-19 12:20:49 -0400
  • 19462d322d
         Add tests, github actions, and executeDdl function (#425) Adam Black 2021-08-19 11:49:36 -0400
  • 05e9b801e0 Rename createdDdl.R to createDdl.R Adam Black 2021-08-19 11:47:56 -0400
  • 948a78c09f remove placeholder text in function documentation. Adam Black 2021-08-19 11:46:01 -0400
  • 6fa70d4e2a
         Merge branch 'OHDSI:v5.4' into v5.4 Elizabeth Betts 2021-08-19 15:46:40 +0100
  • 35ce18ce81 Add comment to github actions workflow file. Adam Black 2021-08-19 09:23:11 -0400
  • 618f35fe02 Fix schema environment variable name Adam Black 2021-08-19 09:13:04 -0400
  • 66a892d87c add print statement for debugging schema error on github actions. Adam Black 2021-08-19 09:11:02 -0400
  • fb950dedf8 revert accidental change in description Adam Black 2021-08-19 08:58:34 -0400
  • c2717409d3 Add execute test back in Adam Black 2021-08-19 08:33:24 -0400
  • cea09cf273 fix bug in test Adam Black 2021-08-19 08:23:41 -0400
  • 7ecd0a5410 comment out execute ddl test Adam Black 2021-08-19 08:13:03 -0400
  • c85759800e fix tiny bug Adam Black 2021-08-19 07:47:49 -0400
  • bce8bc5edc debug github actions Adam Black 2021-08-19 07:45:18 -0400
  • 639d6a9d0a debug github actions Adam Black 2021-08-19 07:35:41 -0400
  • 7a59d0350f debug github actions Adam Black 2021-08-19 00:25:02 -0400
  • b54b1947dd debug github actions Adam Black 2021-08-19 00:18:54 -0400
  • 3b2c6b5757 fix small error in setup test file. Adam Black 2021-08-19 00:12:04 -0400
  • d17830759e download drivers before running tests Adam Black 2021-08-19 00:04:51 -0400
  • a6366dff4a update github actions Adam Black 2021-08-18 23:50:22 -0400
  • 33919b85cf Add windows and linux runners in github actions. Adam Black 2021-08-18 23:48:34 -0400
  • 70798bb1b6 update documentation Adam Black 2021-08-18 23:36:11 -0400
  • ae921ede24 add tests for write and execute functions Adam Black 2021-08-18 23:35:38 -0400
  • e6a2940474 update docs Adam Black 2021-08-18 23:34:48 -0400
  • 08bf6ee17e consolidate write functions into one file. Add execute function. Adam Black 2021-08-18 23:32:31 -0400
  • 867e9bb559 removed spaces in file and folder names. Regenerated ddl output. Tried to fix Field_Level.csv file. Adam Black 2021-08-18 23:28:57 -0400
  • 887e882572 update description Adam Black 2021-08-18 23:27:01 -0400
  • f92a21cd64 Add tests for create functions. Adam Black 2021-08-18 17:20:59 -0400
  • 02260fb855 Consolidate 'create' functions into one file. Adam Black 2021-08-18 17:20:34 -0400
  • 9508b28c51 rename .Rproj file. Adam Black 2021-08-18 17:19:56 -0400
  • cccdaef586 update Description file Adam Black 2021-08-18 17:19:34 -0400
  • f603929f8b Add github actions workflow to build package and run tests. Adam Black 2021-08-18 17:19:20 -0400
  • 27522b0896
         Merge pull request #423 from OHDSI/v5.4_cleanup Frank DeFalco 2021-08-18 16:07:09 -0400
  • 918b57bcca Merge branch 'v5.4' into v5.4_cleanup Frank DeFalco 2021-08-18 16:06:08 -0400
  • a4bfeccf83 function naming & additional cleanup Frank DeFalco 2021-08-18 15:30:04 -0400
  • 5dd9850088
         Merge pull request #414 from NACHC-CAD/v5.4 clairblacketer 2021-08-18 15:05:21 -0400
  • ea0fc0f80b
         Merge branch 'v5.4' into v5.4 clairblacketer 2021-08-18 15:05:14 -0400
  • 577cad1cc5
         Merge pull request #413 from aandryc/v5.4 clairblacketer 2021-08-18 14:56:29 -0400