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OMOP
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577 Commits

Author SHA1 Message Date
Maxim Moinat 0c07bfe881
add option to only include subset of tables 2022-12-01 13:59:57 +01:00
Maxim Moinat 759270d000
create ER diagram from OMOP CDM specification 2022-11-30 16:12:26 +01:00
clairblacketer 31c7b54c2b
Merge pull request #521 from odysseusinc/synapse_support 
Missing commit for the Synapse dialect support
 2022-09-26 14:20:30 -04:00
alex-odysseus 07d0383ac8 Missing commit 3e19695be38a2565f6b187b99ec13575b8767165 from the 'synapse' branch 2022-09-26 17:59:28 +02:00
clairblacketer 7dbdede35a
Merge pull request #520 from odysseusinc/synapse_support 
Azure Synapse Analytics Dedicated dialect support
 2022-09-23 11:49:32 -04:00
alex-odysseus eab766eab8 Merge remote-tracking branch 'remotes/origin/snowflake_support' into synapse 2022-09-23 16:40:49 +02:00
alex-odysseus b0685e98c7 Merge remote-tracking branch 'remotes/upstream/main' into snowflake 2022-09-23 16:32:59 +02:00
Clair Blacketer e2d337ce79 Adds vocab option to decision tree 2022-07-26 21:48:28 -04:00
Clair Blacketer 468eca3571 Merge branch 'main' of https://github.com/OHDSI/CommonDataModel 2022-07-26 14:31:44 -04:00
Clair Blacketer bd8287a437 Revert "Fixed broken links" 
This reverts commit 9ae24a6197.
 2022-07-26 14:31:34 -04:00
clairblacketer c3e4afa77a
Merge pull request #507 from OHDSI/cdmRequestProcess-email 
Fix broken email link in cdmRequestProcess
 2022-07-26 12:59:03 -04:00
Clair Blacketer 9ae24a6197 Fixed broken links 2022-07-26 12:58:15 -04:00
Ajit Londhe d255229e12
Fix broken email link in cdmRequestProcess 
Adds missing "mailto"
 2022-07-26 10:33:24 -05:00
Clair Blacketer 888c87383e Adding Decision Tree 2022-07-25 15:27:08 -04:00
ssuvorov-fls 27e1924b1b added azure synapse support 2022-05-23 09:41:37 +03:00
ssuvorov-fls b4b8df34a5 added schema variable to ddl 2022-05-17 09:19:45 +03:00
Clair Blacketer 3b5f6819a5 Fixing an issue in PROCEDURE_OCCURRENCE documentation 2022-04-22 15:25:25 -04:00
Clair Blacketer fb07ebe7f9 Adding system requirements to FAQ 
fixes #492
 2022-04-22 15:12:19 -04:00
Clair Blacketer 800dca15e2 Fixing tables due to kable update, adding fix to drug_era script 2022-04-07 11:14:50 -04:00
Clair Blacketer 8451b5027b Revert "Adding fix to Drug_Era query and conforming to kable updates" 
This reverts commit b3ab33e95e.
 2022-04-07 11:04:01 -04:00
Clair Blacketer b3ab33e95e Adding fix to Drug_Era query and conforming to kable updates 2022-04-07 10:57:51 -04:00
ssuvorov-fls 0c13595972 restored some columns due to changes in omop cdm 2022-04-01 09:08:50 +03:00
ssuvorov-fls e1e010a3df added snowflake support 2022-03-30 10:53:52 +03:00
Clair Blacketer af1effdedc Added reference to the package 2022-01-21 15:35:13 -05:00
Clair Blacketer 477fb8a191 Fixes to CDM v5.4 constraints 
Removed an incorrect linkage of person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:32:48 -05:00
Clair Blacketer 8fecffb215 Fix to CDM v5.3 Constraints 
Removed constraint linking person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:30:53 -05:00
Clair Blacketer 7821578b10 Updating symbols 
This commit changes the symbols used in the support table so that they can be recognized without colors
 2022-01-17 13:29:26 -05:00
clairblacketer 805553cdb2
Merge pull request #462 from na399/master 
Fix broken links: v5.4.0
 2022-01-14 11:38:06 -05:00
clairblacketer 5de46c92b6
Merge pull request #473 from OHDSI/Jan2022_fixes 
Jan2022 fixes
 2022-01-14 10:59:52 -05:00
Clair Blacketer f006431a5e Bug fixes and updates from Nov 2021 - Jan 2022 2022-01-13 13:59:03 -05:00
Clair Blacketer 09fe23fd44 Fixes mismatches in data types (removes bigints) 
closes #453
 2022-01-13 12:34:30 -05:00
Clair Blacketer 4d77b93fe7 Makes sure ingredients pulled are standard concepts 
closes #454
 2022-01-13 12:28:44 -05:00
clairblacketer 80eebce2b6
Merge pull request #472 from OHDSI/master 
Rebase Jan2022_fixes branch
 2022-01-13 12:19:58 -05:00
clairblacketer 7e092bc44e
Merge pull request #460 from flying-burrito/era-dates 
Update v5.3 / v5.4 docs for Era tables: use date type for *_date fields
 2022-01-13 12:15:43 -05:00
Clair Blacketer 4aee003f5d Clean up readMe 
closes #461
 2022-01-13 12:11:00 -05:00
Clair Blacketer 247a1fe0c1 Adds version queries for the cdm and vocab 
closes #463
 2022-01-13 11:49:47 -05:00
Clair Blacketer 6b53641c83 Clarifies CARE_SITE_ID description 
closes #468
 2022-01-13 11:09:21 -05:00
Clair Blacketer c66a27e3db Add link to vocab wiki about type concepts 
closes #470
 2022-01-13 11:07:21 -05:00
Clair Blacketer ed3a4a49a3 Adds link directly to DDLs 
Closes #471
 2022-01-13 11:01:36 -05:00
Clair Blacketer 15f5fb1ed5 Update OMOP_CDMv5.4_Field_Level.csv 
Fixing PK issue in cohort and cohort definition
 2021-12-21 10:07:32 -05:00
Clair Blacketer 125ac08c77 Add CDM R package demo to website 2021-11-19 09:22:53 -05:00
Max Natthawut Adulyanukosol c4b593c35f Fix broken links: v5.4.0 2021-11-18 11:49:33 +07:00
flying-burrito f5841f55e4 upd: v5.3 / v5.4 docs for Era tables, use date type for *_date fields 2021-11-17 16:51:11 +01:00
Clair Blacketer c768fa7e91 Fix to visit_detail change doc v5.4 discharge_to_source_value 2021-09-28 09:18:00 -04:00
Clair Blacketer 57cb8127cb Fix to discharged_to_source_value change doc 2021-09-28 09:04:23 -04:00
Clair Blacketer dd85c0d30b Adding titles to webpages 2021-09-24 21:02:39 -04:00
Clair Blacketer 02af0bc317 Reintroducing a v5.3.1 html page to alleviate confusion 2021-09-24 12:24:55 -04:00
Clair Blacketer 8dfc4835a7 Corresponding fixes to html for v5.3 and v6.0 2021-09-23 15:34:17 -04:00
Clair Blacketer 9e4b5978c8 Bugfix to cdm v6.0 
VISIT_DETAIL.admitting_source_value and admitting_souce_concept_id were renamed to admitted_from_concept_id and admitted_from_source_value.
 2021-09-23 15:26:59 -04:00
Clair Blacketer 4c8f054784 Fix to CDM v6.0 to add back cohort table 2021-09-23 10:52:05 -04:00