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OMOP
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670 Commits

Author SHA1 Message Date
clairblacketer c734c1784c Merge branch 'cdm_v6' of https://github.com/OHDSI/CommonDataModel into cdm_v6 2018-09-27 13:10:36 -04:00
clairblacketer 7d5be9b4c6 Updates to standardized derived element documentation 2018-09-27 13:07:54 -04:00
clairblacketer 1847013c10
Added THEMIS convention around blank PROVIDER_ID 2018-09-27 11:52:27 -04:00
clairblacketer 7736b307e4 Merge branch 'cdm_v6' of https://github.com/OHDSI/CommonDataModel into cdm_v6 2018-09-27 11:47:20 -04:00
clairblacketer 4a03f4f9cd Addition of death_datetime to all Person tables. Commit of documentation changes for the clinical data tables. 2018-09-27 11:46:34 -04:00
clairblacketer fc502396f3
Removed note_domain_id from note table 2018-09-25 14:51:59 -04:00
clairblacketer 86dbcec3e0 Fixes from testers for pdw, redshit, postgres and sql server and survey -> survey_conduct changes. 2018-09-25 12:40:53 -04:00
clairblacketer 62207c4309 Fixes to bigquery as a result of testing and bigquery, impala, oracle, and netezza results schema ddls. 2018-09-24 12:55:05 -04:00
clairblacketer eee81f61ad Impala, Oracle, and Netezza edits from testers 2018-09-24 12:00:16 -04:00
Clair Blacketer 8c6ebe5f95 Addition of sql server results schema 2018-09-20 14:32:21 -04:00
Clair Blacketer 9e4ae062d9 Corrections after results from testers 2018-09-20 14:31:06 -04:00
Clair Blacketer 4d53d7d75b Added list to convention #6 2018-09-19 12:59:48 -04:00
Clair Blacketer 6dd6626630 Fixed prior merge commit 2018-09-19 12:52:17 -04:00
Clair Blacketer 93c48f7a85 Merge branch 'cdm_v6' of https://github.com/OHDSI/CommonDataModel into cdm_v6 2018-09-19 12:50:49 -04:00
Clair Blacketer 0a4c76b4e2 Fixed convention numbering 2018-09-19 12:49:38 -04:00
clairblacketer 403c763ad0
Fixed convention #10 list 2018-09-19 12:48:52 -04:00
clairblacketer eaa2768f59
Added lists to tables 2018-09-06 16:02:47 -04:00
Clair Blacketer 7afa9583ba condition occurrence wiki file convention table 2018-09-06 15:57:27 -04:00
Clair Blacketer 72042be538 condition wiki update 2018-09-06 15:55:48 -04:00
Clair Blacketer a078310b73 death, device, drug, condition wiki files 2018-09-06 15:53:06 -04:00
Clair Blacketer 2ff3b82dd1 License update cdm v6 2018-09-05 15:35:54 -04:00
Clair Blacketer ba880b2a76 Background updates for cdm v6 2018-09-05 15:35:22 -04:00
Clair Blacketer 461601c06a CDM v6 updates to background and data model conventions 2018-09-05 11:57:24 -04:00
Clair Blacketer 1c776a01b4 Initial wiki files to begin editing for v6.0 2018-09-04 12:43:36 -04:00
Clair Blacketer 7e4b64bb25 CDM v6 initial commit 2018-08-30 21:00:34 -04:00
clairblacketer 97764a6473
Merge pull request #201 from AlexTawse/repairing-csv-schema 
Repairing CSV schema
 2018-07-24 12:06:36 -04:00
Alex Tawse 4be77a499b Repairing CSV schema 2018-07-24 15:36:31 +01:00
clairblacketer d1cb3c28e3
Merge pull request #197 from edwardhusarcik/master 
Reverted DATETIME2 back to TIMESTAMP in Postgresql
 2018-07-05 14:31:03 -04:00
edwardhusarcik 717bb1a4d6 Reverted DATETIME2 back to TIMESTAMP in Postgresql 
DATETIME2 is not a valid data type in postgresql.
 2018-07-05 11:55:53 -06:00
clairblacketer df6e969dee
Merge pull request #190 from OHDSI/clairblacketer-patch-1 
Remove white space in constraint file
 2018-06-15 08:31:31 -04:00
clairblacketer d527fb7ed0
Remove white space 2018-06-15 08:27:57 -04:00
clairblacketer b12b8cf78c
Remove white space 2018-06-15 08:27:22 -04:00
clairblacketer 999e5995a4
Remove white space on line 184 
Removed white space on line 184 between fpk_ and visit_concept_s
 2018-06-15 08:26:21 -04:00
clairblacketer 9224cc3cfb
Merge pull request #189 from maxtortime/patch-1 
Remove whitespace of line 188
 2018-06-15 08:23:58 -04:00
Taehwan Kim 00f78bffa1
Remove 188 line whitespace 
In 188 line has whitespace between fpk_ and visit_concept_s, so I removed whitespace and query executed normally.
 2018-06-15 14:48:41 +09:00
Clair Blacketer ca1b2376c4 cdm v5.3.1 visit_detail documentation fix 2018-06-14 16:22:39 -04:00
Clair Blacketer c063eb6b15 cdm v5.3.1 updates 2018-06-14 16:17:35 -04:00
Clair Blacketer 589855fdeb CDM v5.3.1 updates 2018-06-14 16:15:03 -04:00
clairblacketer 8c6859fa34
Merge pull request #183 from keithm-thompson/master 
Fix VISIT_DETAIL documentation to reflect correct 'required' and 'type' values for multiple columns
 2018-06-13 10:23:22 -04:00
clairblacketer 6ea92f1112
Merge branch 'master' into master 2018-06-13 10:22:56 -04:00
clairblacketer 2a2e9b0b2c
Fixed flipped columns 
Required and type were flipped
 2018-06-05 12:33:19 -04:00
clairblacketer 89617414fc
Update VISIT_DETAIL.md 2018-06-05 12:16:35 -04:00
clairblacketer efcee2a2a8
Fixed switched columns 2018-06-05 12:16:02 -04:00
Keith Thompson eb8774baa6 Fix VISIT_DETAIL documentation to reflect correct 'required' and 'type' values for multiple columns 2018-05-23 20:01:22 -04:00
clairblacketer d92152467f
Merge pull request #169 from kevinjyee/master 
BigQuery Compatible Table Creations
 2018-05-11 15:09:50 -04:00
clairblacketer c6606bf8d4 Closes #171 - changes datetime formats in sql server DDL to datetime2 2018-05-11 15:03:53 -04:00
clairblacketer 35cc09de77
Merge pull request #174 from OHDSI/fix/173 
Fixes issue #173. The proper way to allow reserve words in Impala is …
 2018-05-11 14:39:49 -04:00
clairblacketer 2b6dc496b4
Merge pull request #177 from MaximMoinat/patch-1 
Fix in postgres readme
 2018-05-11 14:38:31 -04:00
Maxim Moinat b1629bf6bd
Fix in postgres readme 
Steps 4 and 5 have to be performed in the reverse order. Namely, the (foreign key) constraints depend on the primary key created in the indexes file. This was probably introduced in the new DDL generator change.

Not sure whether this is also the case for other SQL languages.
 2018-05-02 14:54:25 +02:00
Karthik Natarajan 8bd2dedfe5 Fixes issue #173. The proper way to allow reserve words in Impala is to use back ticks. 2018-04-10 13:14:41 -04:00