mz-health/OMOP
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OMOP
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595 Commits 20 Branches 19 Tags 22 MiB
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595 Commits

Author SHA1 Message Date
Frank DeFalco 9d73215f42 updating actions for tinytex and pandoc 2023-09-07 15:37:48 -04:00
Frank DeFalco 23e4db4b7e update github actions to setup-r@v2 2023-09-07 14:57:48 -04:00
Frank DeFalco 428420ec94 improve error handling on database connector jar setings. 2023-09-07 14:37:29 -04:00
Frank DeFalco 1bcb2236e8 resolved issues with CHECK and tests. 2023-09-07 13:52:20 -04:00
Frank DeFalco f39870c7d5 correct build of new files 
includes consistent case for table names
proper directory structure
 2023-09-06 13:22:41 -04:00
Frank DeFalco a029324c48 updating for recent SqlRender supported dialects 2023-08-23 12:28:00 -04:00
clairblacketer 8c18f01274
Merge pull request #526 from OHDSI/use-sqlrenderr-supported-dialects 
use the sqlrender function for supported dialects
 2023-07-21 12:02:53 -04:00
clairblacketer 77831c5326
Merge pull request #558 from OHDSI/fix-557 
Documentation fix for cdm_source example sql
 2023-05-01 13:40:05 -04:00
Maxim Moinat 241f35858b
render sqlScripts.html 2023-03-30 16:08:24 +02:00
Maxim Moinat 2bd79da969
formatting 2023-03-30 16:01:54 +02:00
Maxim Moinat f0637ad97d
fixes #557 2023-03-30 16:00:23 +02:00
Clair Blacketer eeb4f27985 add zoom function to erd 2023-02-21 12:59:28 -05:00
Clair Blacketer c61839c26b Adding ERD 2023-02-21 08:52:45 -05:00
Clair Blacketer 49338d1c1f Adding GIS and Medical Imaging to the calendar 2023-02-13 13:49:07 -05:00
Clair Blacketer 4432382693 Minor updates to package 
This release has some minor bugfixes and updates to the rmd files
 2023-02-08 15:04:22 -05:00
Clair Blacketer 9c21418040 Updates to Feb 21 and Mar 7 calendar 2023-02-07 12:44:24 -05:00
Clair Blacketer c13606b67e Adding March 7 HADES presentation 2023-01-20 11:50:29 -05:00
Clair Blacketer 1ae1d4c6d0 Add NLP presentation to Feb 7 2023-01-04 07:34:05 -05:00
Clair Blacketer 0a0db00644 Add calendar to CDM website 2023-01-03 14:23:06 -05:00
Frank DeFalco 4f65420456 use the sqlrender function for supported dialects 2022-10-11 17:22:14 -04:00
clairblacketer 31c7b54c2b
Merge pull request #521 from odysseusinc/synapse_support 
Missing commit for the Synapse dialect support
 2022-09-26 14:20:30 -04:00
alex-odysseus 07d0383ac8 Missing commit 3e19695be38a2565f6b187b99ec13575b8767165 from the 'synapse' branch 2022-09-26 17:59:28 +02:00
clairblacketer 7dbdede35a
Merge pull request #520 from odysseusinc/synapse_support 
Azure Synapse Analytics Dedicated dialect support
 2022-09-23 11:49:32 -04:00
alex-odysseus eab766eab8 Merge remote-tracking branch 'remotes/origin/snowflake_support' into synapse 2022-09-23 16:40:49 +02:00
alex-odysseus b0685e98c7 Merge remote-tracking branch 'remotes/upstream/main' into snowflake 2022-09-23 16:32:59 +02:00
Clair Blacketer e2d337ce79 Adds vocab option to decision tree 2022-07-26 21:48:28 -04:00
Clair Blacketer 468eca3571 Merge branch 'main' of https://github.com/OHDSI/CommonDataModel 2022-07-26 14:31:44 -04:00
Clair Blacketer bd8287a437 Revert "Fixed broken links" 
This reverts commit 9ae24a6197.
 2022-07-26 14:31:34 -04:00
clairblacketer c3e4afa77a
Merge pull request #507 from OHDSI/cdmRequestProcess-email 
Fix broken email link in cdmRequestProcess
 2022-07-26 12:59:03 -04:00
Clair Blacketer 9ae24a6197 Fixed broken links 2022-07-26 12:58:15 -04:00
Ajit Londhe d255229e12
Fix broken email link in cdmRequestProcess 
Adds missing "mailto"
 2022-07-26 10:33:24 -05:00
Clair Blacketer 888c87383e Adding Decision Tree 2022-07-25 15:27:08 -04:00
ssuvorov-fls 27e1924b1b added azure synapse support 2022-05-23 09:41:37 +03:00
ssuvorov-fls b4b8df34a5 added schema variable to ddl 2022-05-17 09:19:45 +03:00
Clair Blacketer 3b5f6819a5 Fixing an issue in PROCEDURE_OCCURRENCE documentation 2022-04-22 15:25:25 -04:00
Clair Blacketer fb07ebe7f9 Adding system requirements to FAQ 
fixes #492
 2022-04-22 15:12:19 -04:00
Clair Blacketer 800dca15e2 Fixing tables due to kable update, adding fix to drug_era script 2022-04-07 11:14:50 -04:00
Clair Blacketer 8451b5027b Revert "Adding fix to Drug_Era query and conforming to kable updates" 
This reverts commit b3ab33e95e.
 2022-04-07 11:04:01 -04:00
Clair Blacketer b3ab33e95e Adding fix to Drug_Era query and conforming to kable updates 2022-04-07 10:57:51 -04:00
ssuvorov-fls 0c13595972 restored some columns due to changes in omop cdm 2022-04-01 09:08:50 +03:00
ssuvorov-fls e1e010a3df added snowflake support 2022-03-30 10:53:52 +03:00
Clair Blacketer af1effdedc Added reference to the package 2022-01-21 15:35:13 -05:00
Clair Blacketer 477fb8a191 Fixes to CDM v5.4 constraints 
Removed an incorrect linkage of person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:32:48 -05:00
Clair Blacketer 8fecffb215 Fix to CDM v5.3 Constraints 
Removed constraint linking person.person_id as a foreign key to payer_plan_period.payer_plan_period_id
 2022-01-21 15:30:53 -05:00
Clair Blacketer 7821578b10 Updating symbols 
This commit changes the symbols used in the support table so that they can be recognized without colors
 2022-01-17 13:29:26 -05:00
clairblacketer 805553cdb2
Merge pull request #462 from na399/master 
Fix broken links: v5.4.0
 2022-01-14 11:38:06 -05:00
clairblacketer 5de46c92b6
Merge pull request #473 from OHDSI/Jan2022_fixes 
Jan2022 fixes
 2022-01-14 10:59:52 -05:00
Clair Blacketer f006431a5e Bug fixes and updates from Nov 2021 - Jan 2022 2022-01-13 13:59:03 -05:00
Clair Blacketer 09fe23fd44 Fixes mismatches in data types (removes bigints) 
closes #453
 2022-01-13 12:34:30 -05:00
Clair Blacketer 4d77b93fe7 Makes sure ingredients pulled are standard concepts 
closes #454
 2022-01-13 12:28:44 -05:00